The antibiotic resistome of swine manure is significantly altered by association with the Musca domestica larvae gut microbiome. Wang, H. et al. ISME J. 11, 100-111 (2017). https://www.ncbi.nlm.nih.gov/pubmed/27458785
Isothermal assay targeting class 1 integrase gene for environmental surveillance of antibiotic resistance markers. Stedtfeld, R. D. et al. J. Environ. Manage. 198, 213-220 (2017). https://www.ncbi.nlm.nih.gov/pubmed/28460328
High-throughput profiling and analysis of antibiotic resistance genes in East Tiaoxi River, China. Zheng, J. et al. Environ. Pollut. 230, 648-654 (2017). https://www.ncbi.nlm.nih.gov/pubmed/28715769
Application of Struvite Alters the Antibiotic Resistome in Soil, Rhizosphere, and Phyllosphere. Chen, Q.-L. et al. Environ. Sci. Technol. 51, 8149-8157 (2017). https://www.ncbi.nlm.nih.gov/pubmed/28628300
Characterization and quantification of antibiotic resistance genes in manure of piglets and adult pigs fed on different diets. Lu, X.-M., Li, W.-F. ＆ Li, C.-B. Environ. Pollut. 229, 102-110 (2017). https://www.ncbi.nlm.nih.gov/pubmed/28582673
Abundance and distribution of antibiotic resistance genes in a full-scale anaerobic–aerobic system alternately treating ribostamycin, spiramycin and paromomycin production wastewater. Tang, M. et al. Environ. Geochem. Health (2017). doi:10.1007/s10653-017-9987-5 https://www.ncbi.nlm.nih.gov/pubmed/28551881
The resistome of farmed fish feces contributes to the enrichment of antibiotic resistance genes in sediments below baltic sea fish farms. Muziasari, W. I. et al. Front. Microbiol. 7, 1-10 (2017). https://www.ncbi.nlm.nih.gov/pubmed/28111573
Does organically produced lettuce harbor higher abundance of antibiotic resistance genes than conventionally produced? Zhu, B., Chen, Q., Chen, S. ＆ Zhu, Y. G. Environ. Int. 98, 152-159 (2017). https://www.ncbi.nlm.nih.gov/pubmed/27823798
Influence of Manure Application on the Environmental Resistome under Finnish Agricultural Practice with Restricted Antibiotic Use. Muurinen, J. et al. Environ. Sci. Technol. 51, 5989-5999 (2017). https://www.ncbi.nlm.nih.gov/pubmed/28453251
TCDD influences reservoir of antibiotic resistance genes in murine gut microbiome. Stedtfeld, R. D. et al. FEMS Microbiol. Ecol. 93, 3435–40 (2017). https://www.ncbi.nlm.nih.gov/pubmed/28475713
Long-term field application of sewage sludge increases the abundance of antibiotic resistance genes in soil. Chen, Q. et al. Environ. Int. 92–93, 1-10 (2016). https://www.ncbi.nlm.nih.gov/pubmed/27043971
Aquaculture changes the profile of antibiotic resistance and mobile genetic element associated genes in Baltic Sea sediments. Muziasari, W. I. et al. FEMS Microbiol. Ecol. 92, fiw052 (2016). https://www.ncbi.nlm.nih.gov/pubmed/26976842
Antimicrobial resistance Dashboard application for mapping environmental occurrence and resistant pathogens. Stedtfeld, R. D. et al. FEMS Microbiol. Ecol. 92, 1-9 (2016). https://www.ncbi.nlm.nih.gov/pubmed/26850162
High-throughput profiling of antibiotic resistance genes in drinking water treatment plants and distribution systems. Xu, L. et al. Environ. Pollut. 213, 119-126 (2016). https://www.ncbi.nlm.nih.gov/pubmed/26890482
Influence of Soil Characteristics and Proximity to Antarctic Research Stations on Abundance of Antibiotic Resistance Genes in Soils. Wang, F. et al. Environ. Sci. Technol. 50, 12621-12629 (2016). https://www.ncbi.nlm.nih.gov/pubmed/27797533
Long-Term Impact of Field Applications of Sewage Sludge on Soil Antibiotic Resistome. Xie, W.-Y. et al
Changes in antibiotic concentrations and antibiotic resistome during commercial composting of animal manures. Xie, W.-Y. et al. Environ. Pollut. 219, 182-190 (2016). https://www.ncbi.nlm.nih.gov/pubmed/27814534
Antibiotic Resistome and Its Association with Bacterial Communities during Sewage Sludge Composting. Su, J. Q. et al.
Environ. Sci. Technol. 49, 7356-7363 (2015). https://www.ncbi.nlm.nih.gov/pubmed/27934260
Increased levels of antibiotic resistance in urban stream of Jiulongjiang River, China. Ouyang, W. Y., Huang, F. Y., Zhao, Y., Li, H. ＆ Su, J. Q. Appl Microbiol. Biotechnol. 99, 5697-5707 (2015). https://www.ncbi.nlm.nih.gov/pubmed/25661810
High Throughput Profiling of Antibiotic Resistance Genes in Urban Park Soils with Reclaimed Water Irrigation. Wang, F.-H. et al. Environ. Sci. Technol. 48, 9079-9085 (2014). https://www.ncbi.nlm.nih.gov/pubmed/25057898
High-throughput quantification of antibiotic resistance genes from an urban wastewater treatment plant. Karkman, A. et al. FEMS Microbiol. Ecol. 92, 1-7 (2016). https://www.ncbi.nlm.nih.gov/pubmed/26832203
Cancer
Selective activation of miRNAs of the primate-specific chromosome 19 miRNA cluster (C19MC) in cancer and stem cells and possible contribution to regulation of apoptosis. Nguyen, P. N. N., Huang, C.-J., Sugii, S., Cheong, S. K. ＆ Choo, K. B. J. Biomed. Sci. 24, NA copy number alterations in c20 (2017). https://www.ncbi.nlm.nih.gov/pubmed/28270145
Targeted genomic screen reveals focal long non-coding RNA copy number alterations in cancer. Volders, P.-J. et al. bioRxiv 113316 (2017). doi:10.1101/113316
Hypoxia-responsive miR-210 promotes self-renewal capacity of colon tumor-initiating cells by repressing ISCU and by inducing lactate production. Ullmann, P. et al. Oncotarget 7, (2016). https://www.ncbi.nlm.nih.gov/pubmed/27589845
Long non-coding RNA expression pro fi ling in the NCI 60 cancer cell line panel using. Mestdagh, P., Lefever, S., Volders, P. ＆ Derveaux, S. Sci. Data 1-6 (2016). doi:10.1038/sdata.2016.52 https://www.ncbi.nlm.nih.gov/pubmed/27377824
Defining a population of stem-like human prostate cancer cells that can generate and propagate castration-resistant prostate cancer. Chen, X. et al. Clin. Cancer Res. 22, 4505-4516 (2016). https://www.ncbi.nlm.nih.gov/pubmed/27060154
Intraindividual Temporal miRNA Variability in Serum, Plasma, and White Blood Cell Subpopulations. Ammerlaan, W. ＆ Betsou, F. Biopreserv. Biobank. 14, bio.2015.0125 (2016). https://www.ncbi.nlm.nih.gov/pubmed/27096687
Panx3 links body mass index and tumorigenesis in a genetically heterogeneous mouse model of carcinogen-induced cancer. Halliwill, K. D. et al. Genome Med. 8, 1-17 (2016). https://www.ncbi.nlm.nih.gov/pubmed/27506198
Molecular Characterization of the Oncogenic Potential and Mechanisms of Cytomegalovirus Infecting Mrc-5 Cells. Abdulamir, A. S. Iraqi J. Med. Sci. 14, (2016).
Identification of Critical Biomarkers Responsive to Anti-Autophagy Therapies for Pancreatic Ductal Adenocarcinoma through a Performance Analysis of miRNA Platforms. Sardi, S. H., Glassner, B. J., Chang, J. R. ＆ Yim, S. H. J. Bioanal. Biomed. 1 (2014). doi:10.4172/1948-593X.S10-001
Evaluation and validation of a robust single cell RNA-amplification protocol through transcriptional profiling of enriched lung cancer initiating cells. Rothwell, D. G. et al. BMC Genomics 15, 1129 (2014). https://www.ncbi.nlm.nih.gov/pubmed/25519510
MicroRNA-5p and -3p co-expression and cross-targeting in colon cancer cells. Choo, K. B., Soon, Y. L., Nguyen, P. N. N., Hiew, M. S. Y. ＆ Huang, C.-J. J. Biomed. Sci. 21, 95 (2014). https://www.ncbi.nlm.nih.gov/pubmed/25287248
Oxidative stress diverts trna synthetase to nucleus for protection against dna damage. Wei, N. et al. Mol. Cell 56, 323–332 (2014). https://www.ncbi.nlm.nih.gov/pubmed/25284223
miRNA
Intraindividual Temporal miRNA Variability in Serum, Plasma, and White Blood Cell Subpopulations. Biopreserv. Ammerlaan, W. ＆ Betsou, F. Biobank. 14, bio.2015.0125 (2016). https://www.ncbi.nlm.nih.gov/pubmed/27096687
Differentially expressed microRNAs in maternal plasma for the noninvasive prenatal diagnosis of down syndrome (Trisomy 21). Kamhieh-Milz, J. et al. Biomed Res. Int. 2014, (2014). https://www.ncbi.nlm.nih.gov/pubmed/25478570
Evaluation of quantitative miRNA expression platforms in the microRNA quality control (miRQC) study. Mestdagh, P. et al. Nat. Methods 11, 809–815 (2014). https://www.ncbi.nlm.nih.gov/pubmed/24973947
Glucocorticoids suppress T cell function by up-regulating microRNA-98. Davis, T. E., Kis-Toth, K., Szanto, A. ＆ Tsokos, G. C. Arthritis Rheum. 65, 1882-1890 (2013).
Others
RNA-Seq versus oligonucleotide array assessment of dose-dependent TCDD-elicited hepatic gene expression in mice. Nault, R., Fader, K. A. ＆ Zacharewski, T. BMC Genomics 16, 373 (2015). https://www.ncbi.nlm.nih.gov/pubmed/25958198
Single cell genomic study of Dehalococcoidetes species from deep-sea sediments of the Peruvian Margin Kaster et al. ISME doi:10.1038/ismej.2014.24 https://www.ncbi.nlm.nih.gov/pubmed/24599070
