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Investigation of Dipeptidyl-Peptidase IV Function in Airway Epithelial Type 2 Inflammation
A.M. Stoner, S. Sajuthi, J.L. Everman, C. Rios, M.T. Montgomery, C. Eng, E.G. Burchard, M.A. Seibold
American Journal of Respiratory and Critical Care Medicine 2018;197:A7200

Single-cell RNA Sequencing Identifies Two New Subpopulations of Alveolar Macrophages Following Acute Lung Injury
K. Mould, N. Jackson, M.A. Seibold, W.J. Janssen
American Journal of Respiratory and Critical Care Medicine 2018;197:A4497

pheno-seq - linking 3D phenotypes of clonal tumor spheroids to gene expression
Stephan Marius Tirier, Jeongbin Park, Friedrich Preusser, Lisa Amrhein, Zuguang Gu, Simon Steiger, Jan-Philipp Mallm, Marcel Waschow, Bjoern Eismann, Marta Gut, Ivo Glynne Gut, Karsten Rippe, Matthias Schlesner, Fabian Theis, Christiane Fuchs, Claudia R. Ball, Hanno Glimm, Roland Eils, Christian Conrad
bioRxiv preprint first posted online May. 1, 2018; doi: http://dx.doi.

High-throughput chromatin accessibility profiling at single-cell resolution
Anja Mezger, Sandy Klemm, Ishminder Mann, Kara Brower, Alain Mir, Magnolia Bostick, Andrew Farmer, Polly Fordyce1, Sten Linnarsson, and William Greenleaf
Nature communications preprint first posted online Apr. 28, 2018;

Chemoresistance Evolution in Triple-Negative Breast Cancer Delineated by Single-Cell Sequencing
Charissa Kim, Ruli Gao, Emi Sei, Rachel Brandt, Johan Hartman, Thomas Hatschek, Nicola Crosetto, Theodoros Foukakis, Nicholas E. Navin
Cell 2018 May 3 ; 173: 1–15.

Massively parallel nanowell-based single-cell gene expression profiling.
Goldstein LD, Chen YJ, Dunne J, Mir A, Hubschle H, Guillory J, Yuan W, Zhang J, Stinson J, Jaiswal B, Pahuja KB, Mann I, Schaal T, Chan L, Anandakrishnan S, Lin CW, Espinoza P, Husain S, Shapiro H, Swaminathan K, Wei S, Srinivasan M, Seshagiri S, Modrusan Z.
BMC Genomics. 2017 Jul 7; 18(1):519. doi: 10.1186/s12864-017-3893-1.

Nanogrid single-nucleus RNA sequencing reveals phenotypic diversity in breast cancer
Gao R, Kim C, Sei E, Foukakis T, Crosetto N, Chan LK, Srinivasan M, Zhang H, Meric-Bernstam F, Navin N.
Nat Commun. 2017 Aug 9; 8(1):228. doi: 10.1038/s41467-017-00244-w.

Coupling shRNA screens with single-cell RNA-seq identifies a dual role for mTOR in reprogramming-induced senescence.
Aarts M, Georgilis A, Beniazza M, Beolchi P, Banito A, Carroll T, Kulisic M, Kaemena DF, Dharmalingam G, Martin N, Reik W, Zuber J, Kaji K, Chandra T, Gil J
Genes Dev. 2017 Nov 14. doi: 10.1101/gad.297796.117.

Single-cell transcriptomics reveals a new dynamical function of transcription factors during embryonic hematopoiesis
Bergiers, I. et al. Elife (2018) 7, e29312.

Single-nuclei RNA-seq on human retinal tissue provides improved transcriptome profiling
Liang, Q. et al. bioRxiv (2018) 468207. doi.org/10.1101/468207

ZIC3 controls the transition from naïve to primed pluripotency
Yang, S. H. et al. bioRxiv (2018) 435131 . doi.org/10.1101/435131

STRT-seq-2i: dual-index 5ʹ single cell and nucleus RNA-seq on an addressable microwell array
Hochgerner, H. et al. Sci. Rep. (2017) 7, 16327.

Full-length single-cell RNA-seq applied to a viral human cancer: applications to HPV expression and splicing analysis in HeLa S3 cells
Wu, L. et al. Gigascience (2015) 4, 51.

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