BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-01.f
(999 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1518 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1518 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 85 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 144
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 145 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 205 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 265 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 325 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 385 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 445 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 505 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 565 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 625 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 276
Query: 685 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 216
Query: 745 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 156
Query: 805 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 155 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 102
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 85 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 144
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 145 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 205 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 265 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 325 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 385 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 445 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 505 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 565 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 625 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 685 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 745 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 805 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 85 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 144
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 145 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 205 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 265 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 325 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 385 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 445 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 505 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 565 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 625 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 186
Query: 685 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 126
Query: 745 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 66
Query: 805 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 65 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 12
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 85 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 144
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 145 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 205 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 265 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 325 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 385 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 445 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 505 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 565 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 625 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 685 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 745 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 805 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 85 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 144
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 145 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 205 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 265 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 325 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 385 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 445 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 505 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 565 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 625 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 187
Query: 685 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 127
Query: 745 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 67
Query: 805 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 66 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 13
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-02.f
(1014 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1526 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1526 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 626 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 686 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 746 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 806 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 875
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 626 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 686 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 746 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 806 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 626 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 686 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 746 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 806 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 785
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 626 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 686 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 746 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 806 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 626 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 686 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 746 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 806 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 786
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-03.f
(1042 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1503 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1503 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1503 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1503 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1503 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1503 bits (758), Expect = 0.0
Identities = 771/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 802 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 854
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 875
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1503 bits (758), Expect = 0.0
Identities = 771/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 802 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 854
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1503 bits (758), Expect = 0.0
Identities = 771/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 802 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 854
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 785
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1503 bits (758), Expect = 0.0
Identities = 771/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 802 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 854
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1503 bits (758), Expect = 0.0
Identities = 771/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 802 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 854
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 786
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-04.f
(1019 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1530 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1530 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1530 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1530 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1530 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1530 bits (772), Expect = 0.0
Identities = 775/776 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 877
Score = 77.8 bits (39), Expect = 1e-12
Identities = 52/55 (94%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 857 agtttgatcctgggctcacggtgaacgctggcggcgtggctaagacatgcaagtc 911
||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 100 agtttgatcctgg-ctcagggtgaacgctggcggcgtgcctaagacatgcaagtc 153
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1530 bits (772), Expect = 0.0
Identities = 775/776 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 780
Score = 77.8 bits (39), Expect = 1e-12
Identities = 52/55 (94%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 857 agtttgatcctgggctcacggtgaacgctggcggcgtggctaagacatgcaagtc 911
||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 3 agtttgatcctgg-ctcagggtgaacgctggcggcgtgcctaagacatgcaagtc 56
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1530 bits (772), Expect = 0.0
Identities = 775/776 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 787
Score = 77.8 bits (39), Expect = 1e-12
Identities = 52/55 (94%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 857 agtttgatcctgggctcacggtgaacgctggcggcgtggctaagacatgcaagtc 911
||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 10 agtttgatcctgg-ctcagggtgaacgctggcggcgtgcctaagacatgcaagtc 63
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1530 bits (772), Expect = 0.0
Identities = 775/776 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 780
Score = 77.8 bits (39), Expect = 1e-12
Identities = 52/55 (94%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 857 agtttgatcctgggctcacggtgaacgctggcggcgtggctaagacatgcaagtc 911
||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 3 agtttgatcctgg-ctcagggtgaacgctggcggcgtgcctaagacatgcaagtc 56
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1530 bits (772), Expect = 0.0
Identities = 775/776 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 788
Score = 77.8 bits (39), Expect = 1e-12
Identities = 52/55 (94%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 857 agtttgatcctgggctcacggtgaacgctggcggcgtggctaagacatgcaagtc 911
||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 11 agtttgatcctgg-ctcagggtgaacgctggcggcgtgcctaagacatgcaagtc 64
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-05.f
(1018 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1513 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1513 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1513 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1513 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1513 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1513 bits (763), Expect = 0.0
Identities = 773/775 (99%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccgggattagataccctggta 859
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtggggagcaaacc-ggattagatacccgggta 875
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1513 bits (763), Expect = 0.0
Identities = 773/775 (99%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccgggattagataccctggta 859
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaacc-ggattagatacccgggta 778
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1513 bits (763), Expect = 0.0
Identities = 773/775 (99%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccgggattagataccctggta 859
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtggggagcaaacc-ggattagatacccgggta 785
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1513 bits (763), Expect = 0.0
Identities = 773/775 (99%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccgggattagataccctggta 859
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaacc-ggattagatacccgggta 778
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1513 bits (763), Expect = 0.0
Identities = 773/775 (99%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccgggattagataccctggta 859
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtggggagcaaacc-ggattagatacccgggta 786
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-06.f
(1010 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1511 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1511 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1511 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1511 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1511 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 263 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 276
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 216
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 156
Query: 803 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 155 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 102
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 263 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 803 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 263 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 186
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 126
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 66
Query: 803 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 65 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 12
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 263 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 803 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 263 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 187
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 127
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 67
Query: 803 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 66 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 13
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-07.f
(1004 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 3e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 3e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 3e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.062
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 488 tttaatgatccttccgcaggttcacc 513
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 493 tgatccttccgcaggttcacctacggaaaccttgtta 529
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 493 tgatccttccgcaggttcacctacggaaaccttgtta 529
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 493 tgatccttccgcaggttcacctacggaaaccttgtta 529
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.062
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 493 tgatccttccgcaggttcacctacggaaaccttgtta 529
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-08.f
(1045 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 7e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 3e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 3e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 3e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.064
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 7e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 487 tttaatgatccttccgcaggttcacc 512
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.064
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgtta 528
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-09.f
(995 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 3e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 3e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 3e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.061
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 100 ggtgaacctgcggaaggatcattaaa 125
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatca 120
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatca 120
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatca 120
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.061
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatca 120
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-10.f
(992 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.061
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 491 tttaatgatccttccgcaggttcacc 516
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 496 tgatccttccgcaggttcacctacggaaaccttgtta 532
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 496 tgatccttccgcaggttcacctacggaaaccttgtta 532
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 496 tgatccttccgcaggttcacctacggaaaccttgtta 532
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.061
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 496 tgatccttccgcaggttcacctacggaaaccttgtta 532
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-11.f
(961 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.059
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 487 tttaatgatccttccgcaggttcacc 512
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.059
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgtta 528
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-12.f
(364 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
HM641223_1|Acinetobacter calcoaceticus|16S ribosomal RNA 34 5.3
>HM641223_1|Acinetobacter calcoaceticus|16S ribosomal RNA
Length = 905
Score = 34.2 bits (17), Expect = 5.3
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 170 ttgtttttgacaaaaat 186
|||||||||||||||||
Sbjct: 717 ttgtttttgacaaaaat 701
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-13.f
(1012 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1522 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1522 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1522 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1522 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1522 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 860
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 877
Score = 192 bits (97), Expect = 3e-47
Identities = 106/109 (97%)
Strand = Plus / Plus
Query: 858 agtttgatcctggctcacggtgaacgctggcggcgtgcctaagacatgcaagtcgtgctg 917
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 100 agtttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgg 159
Query: 918 gccgcggggttttactccgtgttcagcggcggacgggtgagtaacgcgt 966
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 160 gccgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgt 208
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 860
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 780
Score = 192 bits (97), Expect = 3e-47
Identities = 106/109 (97%)
Strand = Plus / Plus
Query: 858 agtttgatcctggctcacggtgaacgctggcggcgtgcctaagacatgcaagtcgtgctg 917
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3 agtttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgg 62
Query: 918 gccgcggggttttactccgtgttcagcggcggacgggtgagtaacgcgt 966
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 63 gccgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgt 111
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 860
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 787
Score = 192 bits (97), Expect = 3e-47
Identities = 106/109 (97%)
Strand = Plus / Plus
Query: 858 agtttgatcctggctcacggtgaacgctggcggcgtgcctaagacatgcaagtcgtgctg 917
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 10 agtttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgg 69
Query: 918 gccgcggggttttactccgtgttcagcggcggacgggtgagtaacgcgt 966
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 70 gccgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgt 118
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 860
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 780
Score = 192 bits (97), Expect = 3e-47
Identities = 106/109 (97%)
Strand = Plus / Plus
Query: 858 agtttgatcctggctcacggtgaacgctggcggcgtgcctaagacatgcaagtcgtgctg 917
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3 agtttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgg 62
Query: 918 gccgcggggttttactccgtgttcagcggcggacgggtgagtaacgcgt 966
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 63 gccgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgt 111
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 860
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 788
Score = 192 bits (97), Expect = 3e-47
Identities = 106/109 (97%)
Strand = Plus / Plus
Query: 858 agtttgatcctggctcacggtgaacgctggcggcgtgcctaagacatgcaagtcgtgctg 917
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 11 agtttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgg 70
Query: 918 gccgcggggttttactccgtgttcagcggcggacgggtgagtaacgcgt 966
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 71 gccgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgt 119
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-14.f
(1011 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1518 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1518 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 743 cggtgaaatgcgcaggtaccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 875
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 743 cggtgaaatgcgcaggtaccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 743 cggtgaaatgcgcaggtaccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 785
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 743 cggtgaaatgcgcaggtaccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 743 cggtgaaatgcgcaggtaccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 786
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-15.f
(1028 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1511 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1511 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1511 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1511 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1511 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 383 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 683 gggagcatgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 875
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 383 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 683 gggagcatgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 383 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 683 gggagcatgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 785
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 383 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 683 gggagcatgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 383 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 683 gggagcatgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 786
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-16.f
(1032 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1528 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1528 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1528 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1528 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1528 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1528 bits (771), Expect = 0.0
Identities = 774/775 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtag 858
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtag 876
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1528 bits (771), Expect = 0.0
Identities = 774/775 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtag 858
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtag 779
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1528 bits (771), Expect = 0.0
Identities = 774/775 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtag 858
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtag 786
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1528 bits (771), Expect = 0.0
Identities = 774/775 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtag 858
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtag 779
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1528 bits (771), Expect = 0.0
Identities = 774/775 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtag 858
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtag 787
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-17.f
(1046 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1503 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1503 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1503 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1503 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1503 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1503 bits (758), Expect = 0.0
Identities = 770/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 622
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 623 tagctgatggggcgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 276
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 216
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 156
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 155 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 102
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1503 bits (758), Expect = 0.0
Identities = 770/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 622
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 623 tagctgatggggcgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1503 bits (758), Expect = 0.0
Identities = 770/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 622
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 623 tagctgatggggcgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 186
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 126
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 66
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 65 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 12
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1503 bits (758), Expect = 0.0
Identities = 770/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 622
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 623 tagctgatggggcgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1503 bits (758), Expect = 0.0
Identities = 770/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 622
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 623 tagctgatggggcgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 187
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 127
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 67
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 66 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 13
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-18.f
(1023 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1511 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1511 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1511 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1511 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1511 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 84 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 144 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 204 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 264 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 324 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 383
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 384 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 444 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 504 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 563
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 564 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 624 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 276
Query: 684 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 216
Query: 744 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 156
Query: 804 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 102
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 84 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 144 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 204 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 264 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 324 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 383
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 384 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 444 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 504 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 563
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 564 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 624 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 684 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 744 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 804 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 84 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 144 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 204 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 264 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 324 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 383
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 384 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 444 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 504 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 563
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 564 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 624 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 186
Query: 684 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 126
Query: 744 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 66
Query: 804 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 12
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 84 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 144 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 204 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 264 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 324 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 383
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 384 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 444 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 504 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 563
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 564 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 624 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 684 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 744 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 804 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 84 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 144 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 204 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 264 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 324 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 383
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 384 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 444 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 504 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 563
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 564 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 624 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 187
Query: 684 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 127
Query: 744 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 67
Query: 804 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 13
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-19.f
(1005 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 3e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 3e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 3e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.062
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 97 ggtgaacctgcggaaggatcattaaa 122
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatca 117
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatca 117
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatca 117
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.062
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatca 117
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-20.f
(631 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.038
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 98 ggtgaacctgcggaaggatcattaaa 123
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatca 118
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatca 118
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatca 118
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatca 118
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-21.f
(990 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.061
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 487 tttaatgatccttccgcaggttcacc 512
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.061
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgtta 528
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-22.f
(982 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.060
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 99 ggtgaacctgcggaaggatcattaaa 124
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.060
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-23.f
(990 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 52 6e-05
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 52 6e-05
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 52 6e-05
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 44 0.015
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 52.0 bits (26), Expect = 6e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 493 tgatccttccgcaggttcacctacggaaaccttgttac 530
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgttac 1429
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 52.0 bits (26), Expect = 6e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 493 tgatccttccgcaggttcacctacggaaaccttgttac 530
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgttac 1433
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 52.0 bits (26), Expect = 6e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 493 tgatccttccgcaggttcacctacggaaaccttgttac 530
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgttac 1431
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 488 tttaatgatccttccgcaggttcacc 513
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 936 tttaatgatccttccgcaggttca 959
||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttca 26
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 44.1 bits (22), Expect = 0.015
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 493 tgatccttccgcaggttcacctacggaaaccttgttac 530
|||||| ||||||||||| ||||||| ||||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgttac 1418
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-24.f
(956 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.059
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 487 tttaatgatccttccgcaggttcacc 512
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.059
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgtta 528
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-25.f
(1017 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1511 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1511 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1511 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1511 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1511 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaa-gcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 875
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaa-gcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaa-gcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 785
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaa-gcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaa-gcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 786
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-26.f
(1024 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1526 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1526 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 875
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 785
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 786
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-27.f
(1051 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1520 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1520 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1520 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1520 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1520 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1520 bits (767), Expect = 0.0
Identities = 773/775 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtag 857
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtag 876
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1520 bits (767), Expect = 0.0
Identities = 773/775 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtag 857
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtag 779
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1520 bits (767), Expect = 0.0
Identities = 773/775 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtag 857
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtag 786
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1520 bits (767), Expect = 0.0
Identities = 773/775 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtag 857
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtag 779
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1520 bits (767), Expect = 0.0
Identities = 773/775 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtag 857
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtag 787
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-28.f
(1041 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1526 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1526 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 858
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 875
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 858
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 858
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 785
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 858
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 858
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 786
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-29.f
(1043 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1513 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1513 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1513 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1513 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1513 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1513 bits (763), Expect = 0.0
Identities = 773/775 (99%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 804 cgtgacgctgaggcgcgaaagcgtgggggagcaaaccggattagataccctggta 858
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgt-ggggagcaaaccggattagatacccgggta 875
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1513 bits (763), Expect = 0.0
Identities = 773/775 (99%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 804 cgtgacgctgaggcgcgaaagcgtgggggagcaaaccggattagataccctggta 858
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgt-ggggagcaaaccggattagatacccgggta 778
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1513 bits (763), Expect = 0.0
Identities = 773/775 (99%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 804 cgtgacgctgaggcgcgaaagcgtgggggagcaaaccggattagataccctggta 858
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgt-ggggagcaaaccggattagatacccgggta 785
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1513 bits (763), Expect = 0.0
Identities = 773/775 (99%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 804 cgtgacgctgaggcgcgaaagcgtgggggagcaaaccggattagataccctggta 858
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgt-ggggagcaaaccggattagatacccgggta 778
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1513 bits (763), Expect = 0.0
Identities = 773/775 (99%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 804 cgtgacgctgaggcgcgaaagcgtgggggagcaaaccggattagataccctggta 858
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgt-ggggagcaaaccggattagatacccgggta 786
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-30.f
(1028 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 729 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 729 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 729 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 729 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 729 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 85 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 410
Query: 145 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 350
Query: 205 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 290
Query: 265 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 230
Query: 325 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 170
Query: 385 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 110
Query: 445 ggatcaaa 452
||||||||
Sbjct: 109 ggatcaaa 102
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 85 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 313
Query: 145 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 253
Query: 205 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 193
Query: 265 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 133
Query: 325 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 73
Query: 385 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 13
Query: 445 ggatcaaa 452
||||||||
Sbjct: 12 ggatcaaa 5
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 85 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 320
Query: 145 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 260
Query: 205 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 200
Query: 265 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 140
Query: 325 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 80
Query: 385 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 20
Query: 445 ggatcaaa 452
||||||||
Sbjct: 19 ggatcaaa 12
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 85 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 313
Query: 145 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 253
Query: 205 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 193
Query: 265 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 133
Query: 325 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 73
Query: 385 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 13
Query: 445 ggatcaaa 452
||||||||
Sbjct: 12 ggatcaaa 5
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 85 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 321
Query: 145 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 261
Query: 205 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 201
Query: 265 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 141
Query: 325 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 81
Query: 385 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 21
Query: 445 ggatcaaa 452
||||||||
Sbjct: 20 ggatcaaa 13
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-31.f
(1083 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 52 7e-05
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 52 7e-05
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 52 7e-05
AB603645_1|Micrococcus sp. A02|16S rRNA 52 7e-05
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 44 0.017
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 52.0 bits (26), Expect = 7e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgttac 529
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgttac 1429
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 52.0 bits (26), Expect = 7e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgttac 529
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgttac 1433
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 52.0 bits (26), Expect = 7e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgttac 529
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgttac 1431
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 7e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 487 tttaatgatccttccgcaggttcacc 512
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 44.1 bits (22), Expect = 0.017
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgttac 529
|||||| ||||||||||| ||||||| ||||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgttac 1418
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-32.f
(1013 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 3e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 3e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 3e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.062
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 486 tttaatgatccttccgcaggttcacc 511
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 491 tgatccttccgcaggttcacctacggaaaccttgtta 527
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 491 tgatccttccgcaggttcacctacggaaaccttgtta 527
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 491 tgatccttccgcaggttcacctacggaaaccttgtta 527
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.062
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 491 tgatccttccgcaggttcacctacggaaaccttgtta 527
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-33.f
(1003 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 52 6e-05
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 52 6e-05
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 52 6e-05
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 44 0.016
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 52.0 bits (26), Expect = 6e-05
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 529 gtaacaaggtttccgtaggtgaacctgcggaaggatca 566
|||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1429 gtaacaaggtatccgtaggggaacctgcggatggatca 1466
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatca 118
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 52.0 bits (26), Expect = 6e-05
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 529 gtaacaaggtttccgtaggtgaacctgcggaaggatca 566
|||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1433 gtaacaaggtatccgtaggggaacctgcggatggatca 1470
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatca 118
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 52.0 bits (26), Expect = 6e-05
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 529 gtaacaaggtttccgtaggtgaacctgcggaaggatca 566
|||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1431 gtaacaaggtatccgtaggggaacctgcggatggatca 1468
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatca 118
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 98 ggtgaacctgcggaaggatcattaaa 123
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 546 ggtgaacctgcggaaggatcattaaa 571
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 44.1 bits (22), Expect = 0.016
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 529 gtaacaaggtttccgtaggtgaacctgcggaaggatca 566
|||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1418 gtaacaaggtagccgtaggggaacctgcggatggatca 1455
Score = 42.1 bits (21), Expect = 0.062
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatca 118
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-34.f
(991 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.061
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 98 ggtgaacctgcggaaggatcattaaa 123
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatca 118
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatca 118
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatca 118
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.061
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatca 118
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-35.f
(965 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.059
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 487 tttaatgatccttccgcaggttcacc 512
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.059
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgtta 528
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-36.f
(942 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.058
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 102 ggtgaacctgcggaaggatcattaaa 127
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 86 taacaaggtttccgtaggtgaacctgcggaaggatca 122
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 86 taacaaggtttccgtaggtgaacctgcggaaggatca 122
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 86 taacaaggtttccgtaggtgaacctgcggaaggatca 122
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.058
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 86 taacaaggtttccgtaggtgaacctgcggaaggatca 122
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-37.f
(1012 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1526 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1526 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 276
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 216
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 156
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 102
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 186
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 126
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 66
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 12
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 187
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 127
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 67
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 13
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-38.f
(1027 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1526 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1526 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 276
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 216
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 156
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 102
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 186
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 126
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 66
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 12
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 187
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 127
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 67
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 13
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-39.f
(1106 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1511 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1511 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1511 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1511 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1511 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 803 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 875
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 803 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 803 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 785
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 803 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 803 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 786
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-40.f
(1037 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1526 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1526 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 276
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 216
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 156
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 102
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 186
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 126
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 66
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 12
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 187
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 127
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 67
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 13
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-41.f
(1037 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1518 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1518 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 84 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 144 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 204 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 264 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 324 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 384 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 444 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 504 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 564 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 624 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 276
Query: 684 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 216
Query: 744 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 156
Query: 804 acgacttgcatgtcttgggcacgccgccagcgttcaccctgagccaggatcaaa 857
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 155 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 102
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 84 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 144 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 204 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 264 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 324 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 384 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 444 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 504 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 564 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 624 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 684 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 744 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 804 acgacttgcatgtcttgggcacgccgccagcgttcaccctgagccaggatcaaa 857
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 84 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 144 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 204 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 264 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 324 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 384 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 444 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 504 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 564 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 624 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 186
Query: 684 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 126
Query: 744 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 66
Query: 804 acgacttgcatgtcttgggcacgccgccagcgttcaccctgagccaggatcaaa 857
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 65 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 12
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 84 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 144 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 204 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 264 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 324 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 384 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 444 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 504 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 564 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 624 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 684 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 744 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 804 acgacttgcatgtcttgggcacgccgccagcgttcaccctgagccaggatcaaa 857
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 84 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 144 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 204 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 264 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 324 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 384 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 444 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 504 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 564 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 624 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 187
Query: 684 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 127
Query: 744 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 67
Query: 804 acgacttgcatgtcttgggcacgccgccagcgttcaccctgagccaggatcaaa 857
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 66 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 13
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-42.f
(1038 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1526 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1526 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 875
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 785
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 786
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-43.f
(1033 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 52 7e-05
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 52 7e-05
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 52 7e-05
AB603645_1|Micrococcus sp. A02|16S rRNA 52 7e-05
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 44 0.016
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 52.0 bits (26), Expect = 7e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 494 tgatccttccgcaggttcacctacggaaaccttgttac 531
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgttac 1429
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 52.0 bits (26), Expect = 7e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 494 tgatccttccgcaggttcacctacggaaaccttgttac 531
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgttac 1433
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 52.0 bits (26), Expect = 7e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 494 tgatccttccgcaggttcacctacggaaaccttgttac 531
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgttac 1431
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 7e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 489 tttaatgatccttccgcaggttcacc 514
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
Score = 38.2 bits (19), Expect = 0.99
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 939 tttaatgatccttccgcag 957
|||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcag 31
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 44.1 bits (22), Expect = 0.016
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 494 tgatccttccgcaggttcacctacggaaaccttgttac 531
|||||| ||||||||||| ||||||| ||||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgttac 1418
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-44.f
(1030 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 7e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 3e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 3e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 3e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.063
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 7e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 491 tttaatgatccttccgcaggttcacc 516
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 496 tgatccttccgcaggttcacctacggaaaccttgtta 532
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 496 tgatccttccgcaggttcacctacggaaaccttgtta 532
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 496 tgatccttccgcaggttcacctacggaaaccttgtta 532
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.063
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 496 tgatccttccgcaggttcacctacggaaaccttgtta 532
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-45.f
(1010 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 52 6e-05
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 52 6e-05
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 52 6e-05
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 44 0.016
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 52.0 bits (26), Expect = 6e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 485 tgatccttccgcaggttcacctacggaaaccttgttac 522
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgttac 1429
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 52.0 bits (26), Expect = 6e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 485 tgatccttccgcaggttcacctacggaaaccttgttac 522
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgttac 1433
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 52.0 bits (26), Expect = 6e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 485 tgatccttccgcaggttcacctacggaaaccttgttac 522
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgttac 1431
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 480 tttaatgatccttccgcaggttcacc 505
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 929 tttaatgatccttccgcacgttcacc 954
|||||||||||||||||| |||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 44.1 bits (22), Expect = 0.016
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 485 tgatccttccgcaggttcacctacggaaaccttgttac 522
|||||| ||||||||||| ||||||| ||||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgttac 1418
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-46.f
(997 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 3e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 3e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 3e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.061
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 489 tttaatgatccttccgcaggttcacc 514
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 494 tgatccttccgcaggttcacctacggaaaccttgtta 530
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 494 tgatccttccgcaggttcacctacggaaaccttgtta 530
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 494 tgatccttccgcaggttcacctacggaaaccttgtta 530
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.061
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 494 tgatccttccgcaggttcacctacggaaaccttgtta 530
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-47.f
(969 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 52 6e-05
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 52 6e-05
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 52 6e-05
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 44 0.015
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 52.0 bits (26), Expect = 6e-05
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 532 gtaacaaggtttccgtaggtgaacctgcggaaggatca 569
|||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1429 gtaacaaggtatccgtaggggaacctgcggatggatca 1466
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 85 taacaaggtttccgtaggtgaacctgcggaaggatca 121
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 52.0 bits (26), Expect = 6e-05
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 532 gtaacaaggtttccgtaggtgaacctgcggaaggatca 569
|||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1433 gtaacaaggtatccgtaggggaacctgcggatggatca 1470
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 85 taacaaggtttccgtaggtgaacctgcggaaggatca 121
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 52.0 bits (26), Expect = 6e-05
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 532 gtaacaaggtttccgtaggtgaacctgcggaaggatca 569
|||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1431 gtaacaaggtatccgtaggggaacctgcggatggatca 1468
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 85 taacaaggtttccgtaggtgaacctgcggaaggatca 121
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 101 ggtgaacctgcggaaggatcattaaa 126
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 549 ggtgaacctgcggaaggatcattaaa 574
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 44.1 bits (22), Expect = 0.015
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 532 gtaacaaggtttccgtaggtgaacctgcggaaggatca 569
|||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1418 gtaacaaggtagccgtaggggaacctgcggatggatca 1455
Score = 42.1 bits (21), Expect = 0.059
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 85 taacaaggtttccgtaggtgaacctgcggaaggatca 121
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-48.f
(946 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.058
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 490 tttaatgatccttccgcaggttcacc 515
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 495 tgatccttccgcaggttcacctacggaaaccttgtta 531
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 495 tgatccttccgcaggttcacctacggaaaccttgtta 531
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 495 tgatccttccgcaggttcacctacggaaaccttgtta 531
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.058
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 495 tgatccttccgcaggttcacctacggaaaccttgtta 531
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-49.f
(1023 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1522 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1522 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1522 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1522 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1522 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 276
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 216
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 156
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 155 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 100
Score = 107 bits (54), Expect = 1e-21
Identities = 73/78 (93%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 856 actaccagggtatctcatccggtttgctccccacactttcgcgcctcagcgtcacgggtg 915
|||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 877 actacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtg 818
Query: 916 gcacgaggtggctgcctt 933
| || |||||||||||||
Sbjct: 817 g-accaggtggctgcctt 801
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 3
Score = 107 bits (54), Expect = 1e-21
Identities = 73/78 (93%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 856 actaccagggtatctcatccggtttgctccccacactttcgcgcctcagcgtcacgggtg 915
|||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 780 actacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtg 721
Query: 916 gcacgaggtggctgcctt 933
| || |||||||||||||
Sbjct: 720 g-accaggtggctgcctt 704
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 186
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 126
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 66
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 10
Score = 107 bits (54), Expect = 1e-21
Identities = 73/78 (93%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 856 actaccagggtatctcatccggtttgctccccacactttcgcgcctcagcgtcacgggtg 915
|||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 787 actacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtg 728
Query: 916 gcacgaggtggctgcctt 933
| || |||||||||||||
Sbjct: 727 g-accaggtggctgcctt 711
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 3
Score = 107 bits (54), Expect = 1e-21
Identities = 73/78 (93%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 856 actaccagggtatctcatccggtttgctccccacactttcgcgcctcagcgtcacgggtg 915
|||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 780 actacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtg 721
Query: 916 gcacgaggtggctgcctt 933
| || |||||||||||||
Sbjct: 720 g-accaggtggctgcctt 704
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 187
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 127
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 67
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 66 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 11
Score = 107 bits (54), Expect = 1e-21
Identities = 73/78 (93%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 856 actaccagggtatctcatccggtttgctccccacactttcgcgcctcagcgtcacgggtg 915
|||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 788 actacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtg 729
Query: 916 gcacgaggtggctgcctt 933
| || |||||||||||||
Sbjct: 728 g-accaggtggctgcctt 712
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-50.f
(1021 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1314 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1314 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1314 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1314 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1314 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1314 bits (663), Expect = 0.0
Identities = 748/775 (96%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacgg 383
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 384 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcattg 443
||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 444 ggcgcaagcctgactgatcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 503
|||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 504 tgaaaccgggacgaaaccccccacgaggggactgacggtaccgcggtaataccgcctgcc 563
|||| |||||||||||||||| ||||||||||||||||||||| ||||||| |||| |||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 564 aactccttgccagcaaccgcggtaatacggacggcgcgagcgttacccggattcactggg 623
|||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacagctcacccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 744 cggtgaaatgctcacataccgggaggaacgccgatggcgaatgcagccacctggtccacc 803
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 804 cgtgacgcttatgcgcgaaaccgtggcggagcataccggagtagataccctggta 858
||||||||| | |||||||| ||||| |||||| |||||| ||||||||| ||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtgg-ggagcaaaccggattagatacccgggta 875
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1314 bits (663), Expect = 0.0
Identities = 748/775 (96%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacgg 383
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 384 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcattg 443
||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 444 ggcgcaagcctgactgatcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 503
|||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 504 tgaaaccgggacgaaaccccccacgaggggactgacggtaccgcggtaataccgcctgcc 563
|||| |||||||||||||||| ||||||||||||||||||||| ||||||| |||| |||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 564 aactccttgccagcaaccgcggtaatacggacggcgcgagcgttacccggattcactggg 623
|||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacagctcacccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 744 cggtgaaatgctcacataccgggaggaacgccgatggcgaatgcagccacctggtccacc 803
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 804 cgtgacgcttatgcgcgaaaccgtggcggagcataccggagtagataccctggta 858
||||||||| | |||||||| ||||| |||||| |||||| ||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtgg-ggagcaaaccggattagatacccgggta 778
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1314 bits (663), Expect = 0.0
Identities = 748/775 (96%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacgg 383
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 384 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcattg 443
||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 444 ggcgcaagcctgactgatcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 503
|||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 504 tgaaaccgggacgaaaccccccacgaggggactgacggtaccgcggtaataccgcctgcc 563
|||| |||||||||||||||| ||||||||||||||||||||| ||||||| |||| |||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 564 aactccttgccagcaaccgcggtaatacggacggcgcgagcgttacccggattcactggg 623
|||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacagctcacccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 744 cggtgaaatgctcacataccgggaggaacgccgatggcgaatgcagccacctggtccacc 803
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 804 cgtgacgcttatgcgcgaaaccgtggcggagcataccggagtagataccctggta 858
||||||||| | |||||||| ||||| |||||| |||||| ||||||||| ||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtgg-ggagcaaaccggattagatacccgggta 785
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1314 bits (663), Expect = 0.0
Identities = 748/775 (96%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacgg 383
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 384 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcattg 443
||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 444 ggcgcaagcctgactgatcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 503
|||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 504 tgaaaccgggacgaaaccccccacgaggggactgacggtaccgcggtaataccgcctgcc 563
|||| |||||||||||||||| ||||||||||||||||||||| ||||||| |||| |||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 564 aactccttgccagcaaccgcggtaatacggacggcgcgagcgttacccggattcactggg 623
|||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacagctcacccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 744 cggtgaaatgctcacataccgggaggaacgccgatggcgaatgcagccacctggtccacc 803
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 804 cgtgacgcttatgcgcgaaaccgtggcggagcataccggagtagataccctggta 858
||||||||| | |||||||| ||||| |||||| |||||| ||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtgg-ggagcaaaccggattagatacccgggta 778
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1314 bits (663), Expect = 0.0
Identities = 748/775 (96%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacgg 383
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 384 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcattg 443
||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 444 ggcgcaagcctgactgatcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 503
|||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 504 tgaaaccgggacgaaaccccccacgaggggactgacggtaccgcggtaataccgcctgcc 563
|||| |||||||||||||||| ||||||||||||||||||||| ||||||| |||| |||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 564 aactccttgccagcaaccgcggtaatacggacggcgcgagcgttacccggattcactggg 623
|||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacagctcacccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 744 cggtgaaatgctcacataccgggaggaacgccgatggcgaatgcagccacctggtccacc 803
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 804 cgtgacgcttatgcgcgaaaccgtggcggagcataccggagtagataccctggta 858
||||||||| | |||||||| ||||| |||||| |||||| ||||||||| ||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtgg-ggagcaaaccggattagatacccgggta 786
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-51.f
(1034 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1511 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1511 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1511 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1511 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1511 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggcccacc 803
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 857
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 875
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggcccacc 803
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 857
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggcccacc 803
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 857
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 785
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggcccacc 803
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 857
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggcccacc 803
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 857
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 786
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-52.f
(1049 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1526 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1526 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 875
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 785
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 786
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-53.f
(1071 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1526 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1526 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 857
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 875
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 857
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 857
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 785
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 857
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 857
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 786
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-54.f
(1063 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1530 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1530 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1530 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1530 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1530 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1530 bits (772), Expect = 0.0
Identities = 775/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 276
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 216
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 156
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 100
Score = 135 bits (68), Expect = 6e-30
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 864 ggtatctaatccggtatgctccccacgctttcgcgcctcatcgtcacgggtggacgaggt 923
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 869 ggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtggaccaggt 810
Query: 924 ggatgccttcgccatcagcgttcctccc 951
|| ||||||||||||| |||||||||||
Sbjct: 809 ggctgccttcgccatcggcgttcctccc 782
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1530 bits (772), Expect = 0.0
Identities = 775/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 3
Score = 135 bits (68), Expect = 6e-30
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 864 ggtatctaatccggtatgctccccacgctttcgcgcctcatcgtcacgggtggacgaggt 923
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 772 ggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtggaccaggt 713
Query: 924 ggatgccttcgccatcagcgttcctccc 951
|| ||||||||||||| |||||||||||
Sbjct: 712 ggctgccttcgccatcggcgttcctccc 685
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1530 bits (772), Expect = 0.0
Identities = 775/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 186
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 126
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 66
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 10
Score = 135 bits (68), Expect = 6e-30
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 864 ggtatctaatccggtatgctccccacgctttcgcgcctcatcgtcacgggtggacgaggt 923
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 779 ggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtggaccaggt 720
Query: 924 ggatgccttcgccatcagcgttcctccc 951
|| ||||||||||||| |||||||||||
Sbjct: 719 ggctgccttcgccatcggcgttcctccc 692
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1530 bits (772), Expect = 0.0
Identities = 775/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 3
Score = 135 bits (68), Expect = 6e-30
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 864 ggtatctaatccggtatgctccccacgctttcgcgcctcatcgtcacgggtggacgaggt 923
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 772 ggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtggaccaggt 713
Query: 924 ggatgccttcgccatcagcgttcctccc 951
|| ||||||||||||| |||||||||||
Sbjct: 712 ggctgccttcgccatcggcgttcctccc 685
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1530 bits (772), Expect = 0.0
Identities = 775/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 187
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 127
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 67
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 11
Score = 135 bits (68), Expect = 6e-30
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 864 ggtatctaatccggtatgctccccacgctttcgcgcctcatcgtcacgggtggacgaggt 923
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 780 ggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtggaccaggt 721
Query: 924 ggatgccttcgccatcagcgttcctccc 951
|| ||||||||||||| |||||||||||
Sbjct: 720 ggctgccttcgccatcggcgttcctccc 693
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-55.f
(1036 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 7e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 3e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 3e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 3e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.064
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 7e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 99 ggtgaacctgcggaaggatcattaaa 124
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.064
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-56.f
(1013 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 3e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 3e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 3e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.062
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 100 ggtgaacctgcggaaggatcattaaa 125
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatca 120
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatca 120
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatca 120
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.062
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatca 120
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-57.f
(1003 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 3e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 3e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 3e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.062
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 99 ggtgaacctgcggaaggatcattaaa 124
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.062
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-58.f
(987 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.061
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 488 tttaatgatccttccgcaggttcacc 513
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 493 tgatccttccgcaggttcacctacggaaaccttgtta 529
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 493 tgatccttccgcaggttcacctacggaaaccttgtta 529
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 493 tgatccttccgcaggttcacctacggaaaccttgtta 529
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.061
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 493 tgatccttccgcaggttcacctacggaaaccttgtta 529
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-59.f
(998 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 3e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 3e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 3e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.061
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 486 tttaatgatccttccgcaggttcacc 511
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 491 tgatccttccgcaggttcacctacggaaaccttgtta 527
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 491 tgatccttccgcaggttcacctacggaaaccttgtta 527
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 491 tgatccttccgcaggttcacctacggaaaccttgtta 527
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.061
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 491 tgatccttccgcaggttcacctacggaaaccttgtta 527
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-60.f
(961 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.059
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 486 tttaatgatccttccgcaggttcacc 511
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 491 tgatccttccgcaggttcacctacggaaaccttgtta 527
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 491 tgatccttccgcaggttcacctacggaaaccttgtta 527
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 491 tgatccttccgcaggttcacctacggaaaccttgtta 527
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.059
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 491 tgatccttccgcaggttcacctacggaaaccttgtta 527
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-61.f
(389 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 86 2e-15
JN115087_1|Thermus thermophilus|16S ribosomal RNA 86 2e-15
JN115086_1|Thermus thermophilus|16S ribosomal RNA 86 2e-15
JN115085_1|Thermus thermophilus|16S ribosomal RNA 86 2e-15
JN115084_1|Thermus thermophilus|16S ribosomal RNA 86 2e-15
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 85.7 bits (43), Expect = 2e-15
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 255 ttggggtgtgtccaaaggcctttgcccctttccggatggccccccgtcccatcccctatt 314
|||||||||||||||||| |||||||| |||||||||| ||| ||||||||| ||| |
Sbjct: 278 ttggggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagt 337
Query: 315 tggtggggtaatgccccttcaaggcaacgac 345
||||||||||||| ||| |||||| |||||
Sbjct: 338 tggtggggtaatggcccaccaaggcgacgac 368
>JN115087_1|Thermus thermophilus|16S ribosomal RNA
Length = 853
Score = 85.7 bits (43), Expect = 2e-15
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 255 ttggggtgtgtccaaaggcctttgcccctttccggatggccccccgtcccatcccctatt 314
|||||||||||||||||| |||||||| |||||||||| ||| ||||||||| ||| |
Sbjct: 103 ttggggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagt 162
Query: 315 tggtggggtaatgccccttcaaggcaacgac 345
||||||||||||| ||| |||||| |||||
Sbjct: 163 tggtggggtaatggcccaccaaggcgacgac 193
>JN115086_1|Thermus thermophilus|16S ribosomal RNA
Length = 853
Score = 85.7 bits (43), Expect = 2e-15
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 255 ttggggtgtgtccaaaggcctttgcccctttccggatggccccccgtcccatcccctatt 314
|||||||||||||||||| |||||||| |||||||||| ||| ||||||||| ||| |
Sbjct: 103 ttggggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagt 162
Query: 315 tggtggggtaatgccccttcaaggcaacgac 345
||||||||||||| ||| |||||| |||||
Sbjct: 163 tggtggggtaatggcccaccaaggcgacgac 193
>JN115085_1|Thermus thermophilus|16S ribosomal RNA
Length = 853
Score = 85.7 bits (43), Expect = 2e-15
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 255 ttggggtgtgtccaaaggcctttgcccctttccggatggccccccgtcccatcccctatt 314
|||||||||||||||||| |||||||| |||||||||| ||| ||||||||| ||| |
Sbjct: 103 ttggggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagt 162
Query: 315 tggtggggtaatgccccttcaaggcaacgac 345
||||||||||||| ||| |||||| |||||
Sbjct: 163 tggtggggtaatggcccaccaaggcgacgac 193
>JN115084_1|Thermus thermophilus|16S ribosomal RNA
Length = 853
Score = 85.7 bits (43), Expect = 2e-15
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 255 ttggggtgtgtccaaaggcctttgcccctttccggatggccccccgtcccatcccctatt 314
|||||||||||||||||| |||||||| |||||||||| ||| ||||||||| ||| |
Sbjct: 103 ttggggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagt 162
Query: 315 tggtggggtaatgccccttcaaggcaacgac 345
||||||||||||| ||| |||||| |||||
Sbjct: 163 tggtggggtaatggcccaccaaggcgacgac 193
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-62.f
(1078 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1526 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1526 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 276
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 216
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 156
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 102
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 186
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 126
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 66
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 12
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 187
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 127
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 67
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 13
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-63.f
(1035 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1518 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1518 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 276
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 216
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 156
Query: 802 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 155 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 102
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 802 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 186
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 126
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 66
Query: 802 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 65 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 12
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 802 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 187
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 127
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 67
Query: 802 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 66 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 13
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-64.f
(1034 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1526 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1526 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 276
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 216
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 156
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 102
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 186
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 126
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 66
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 12
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 187
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 127
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 67
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 13
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-65.f
(1059 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1518 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1518 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 875
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 785
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 786
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-66.f
(1024 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1518 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1518 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 875
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 785
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 786
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-67.f
(1047 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 7e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 3e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 3e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 3e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.064
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 7e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 485 tttaatgatccttccgcaggttcacc 510
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.064
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-68.f
(1009 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 3e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 3e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 3e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.062
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 99 ggtgaacctgcggaaggatcattaaa 124
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 83 taacaaggtctccgtaggtgaacctgcggaaggatca 119
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 83 taacaaggtctccgtaggtgaacctgcggaaggatca 119
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 83 taacaaggtctccgtaggtgaacctgcggaaggatca 119
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.062
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 83 taacaaggtctccgtaggtgaacctgcggaaggatca 119
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-69.f
(994 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 3e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 3e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 3e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.061
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 100 ggtgaacctgcggaaggatcattaaa 125
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatca 120
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatca 120
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatca 120
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.061
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatca 120
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-70.f
(976 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.060
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 100 ggtgaacctgcggaaggatcattaaa 125
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatca 120
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatca 120
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatca 120
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.060
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatca 120
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-71.f
(960 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.059
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 487 tttaatgatccttccgcaggttcacc 512
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggagaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggagaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggagaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.059
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggagaccttgtta 528
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-72.f
(944 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.058
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 488 tttaatgatccttccgcaggttcacc 513
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 493 tgatccttccgcaggttcacctacggaaaccttgtta 529
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 493 tgatccttccgcaggttcacctacggaaaccttgtta 529
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 493 tgatccttccgcaggttcacctacggaaaccttgtta 529
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.058
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 493 tgatccttccgcaggttcacctacggaaaccttgtta 529
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-73.f
(1007 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1495 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1495 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1495 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1495 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1495 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1495 bits (754), Expect = 0.0
Identities = 770/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 502 ggaagattcctaactgctgcctcccgtaggaatggggcccgtgtctcaatgcccctgtgg 561
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 276
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 216
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 156
Query: 802 acgacttgcatgtcttaggcacgccgcca-cgttcaccctgagccaggatcaaa 854
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 155 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 102
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1495 bits (754), Expect = 0.0
Identities = 770/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 502 ggaagattcctaactgctgcctcccgtaggaatggggcccgtgtctcaatgcccctgtgg 561
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 802 acgacttgcatgtcttaggcacgccgcca-cgttcaccctgagccaggatcaaa 854
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1495 bits (754), Expect = 0.0
Identities = 770/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 502 ggaagattcctaactgctgcctcccgtaggaatggggcccgtgtctcaatgcccctgtgg 561
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 186
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 126
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 66
Query: 802 acgacttgcatgtcttaggcacgccgcca-cgttcaccctgagccaggatcaaa 854
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 65 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 12
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1495 bits (754), Expect = 0.0
Identities = 770/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 502 ggaagattcctaactgctgcctcccgtaggaatggggcccgtgtctcaatgcccctgtgg 561
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 802 acgacttgcatgtcttaggcacgccgcca-cgttcaccctgagccaggatcaaa 854
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1495 bits (754), Expect = 0.0
Identities = 770/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 502 ggaagattcctaactgctgcctcccgtaggaatggggcccgtgtctcaatgcccctgtgg 561
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 187
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 127
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 67
Query: 802 acgacttgcatgtcttaggcacgccgcca-cgttcaccctgagccaggatcaaa 854
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 66 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 13
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-74.f
(1019 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1526 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1526 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 276
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 216
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 156
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 102
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 186
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 126
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 66
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 12
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 187
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 127
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 67
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 13
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-75.f
(1034 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1522 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1522 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1522 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1522 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1522 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 445 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 504
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 860
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 877
Score = 73.8 bits (37), Expect = 2e-11
Identities = 53/57 (92%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 858 agtttcatcctggactcacggtgaacgctggcggcgtgcctaagacatgcaaatcgt 914
||||| ||||||| |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 100 agtttgatcctgg-ctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgt 155
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 445 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 504
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 860
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 780
Score = 73.8 bits (37), Expect = 2e-11
Identities = 53/57 (92%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 858 agtttcatcctggactcacggtgaacgctggcggcgtgcctaagacatgcaaatcgt 914
||||| ||||||| |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 3 agtttgatcctgg-ctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgt 58
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 445 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 504
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 860
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 787
Score = 73.8 bits (37), Expect = 2e-11
Identities = 53/57 (92%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 858 agtttcatcctggactcacggtgaacgctggcggcgtgcctaagacatgcaaatcgt 914
||||| ||||||| |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 10 agtttgatcctgg-ctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgt 65
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 445 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 504
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 860
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 780
Score = 73.8 bits (37), Expect = 2e-11
Identities = 53/57 (92%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 858 agtttcatcctggactcacggtgaacgctggcggcgtgcctaagacatgcaaatcgt 914
||||| ||||||| |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 3 agtttgatcctgg-ctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgt 58
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 445 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 504
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 860
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 788
Score = 73.8 bits (37), Expect = 2e-11
Identities = 53/57 (92%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 858 agtttcatcctggactcacggtgaacgctggcggcgtgcctaagacatgcaaatcgt 914
||||| ||||||| |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 11 agtttgatcctgg-ctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgt 66
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-76.f
(1044 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1522 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1522 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1522 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1522 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1522 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 276
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 216
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 156
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 155 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 100
Score = 73.8 bits (37), Expect = 2e-11
Identities = 76/85 (89%), Gaps = 3/85 (3%)
Strand = Plus / Minus
Query: 864 ggtatctaatccggtttgctcctcacgctttcgcgcatgatcgtcacgggttgcaccagg 923
|||||||||||||||||||||| ||||||||||||| | | ||||||||| || ||||||
Sbjct: 869 ggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacggg-tggaccagg 811
Query: 924 tgggctgcctttcgccatcagcgtt 948
| ||||||| ||||||||| |||||
Sbjct: 810 t-ggctgcc-ttcgccatcggcgtt 788
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 3
Score = 73.8 bits (37), Expect = 2e-11
Identities = 76/85 (89%), Gaps = 3/85 (3%)
Strand = Plus / Minus
Query: 864 ggtatctaatccggtttgctcctcacgctttcgcgcatgatcgtcacgggttgcaccagg 923
|||||||||||||||||||||| ||||||||||||| | | ||||||||| || ||||||
Sbjct: 772 ggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacggg-tggaccagg 714
Query: 924 tgggctgcctttcgccatcagcgtt 948
| ||||||| ||||||||| |||||
Sbjct: 713 t-ggctgcc-ttcgccatcggcgtt 691
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 186
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 126
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 66
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 10
Score = 73.8 bits (37), Expect = 2e-11
Identities = 76/85 (89%), Gaps = 3/85 (3%)
Strand = Plus / Minus
Query: 864 ggtatctaatccggtttgctcctcacgctttcgcgcatgatcgtcacgggttgcaccagg 923
|||||||||||||||||||||| ||||||||||||| | | ||||||||| || ||||||
Sbjct: 779 ggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacggg-tggaccagg 721
Query: 924 tgggctgcctttcgccatcagcgtt 948
| ||||||| ||||||||| |||||
Sbjct: 720 t-ggctgcc-ttcgccatcggcgtt 698
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 3
Score = 73.8 bits (37), Expect = 2e-11
Identities = 76/85 (89%), Gaps = 3/85 (3%)
Strand = Plus / Minus
Query: 864 ggtatctaatccggtttgctcctcacgctttcgcgcatgatcgtcacgggttgcaccagg 923
|||||||||||||||||||||| ||||||||||||| | | ||||||||| || ||||||
Sbjct: 772 ggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacggg-tggaccagg 714
Query: 924 tgggctgcctttcgccatcagcgtt 948
| ||||||| ||||||||| |||||
Sbjct: 713 t-ggctgcc-ttcgccatcggcgtt 691
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 187
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 127
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 67
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 66 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 11
Score = 73.8 bits (37), Expect = 2e-11
Identities = 76/85 (89%), Gaps = 3/85 (3%)
Strand = Plus / Minus
Query: 864 ggtatctaatccggtttgctcctcacgctttcgcgcatgatcgtcacgggttgcaccagg 923
|||||||||||||||||||||| ||||||||||||| | | ||||||||| || ||||||
Sbjct: 780 ggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacggg-tggaccagg 722
Query: 924 tgggctgcctttcgccatcagcgtt 948
| ||||||| ||||||||| |||||
Sbjct: 721 t-ggctgcc-ttcgccatcggcgtt 699
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-77.f
(1024 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1522 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1522 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1522 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1522 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1522 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 384 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 877
Score = 99.6 bits (50), Expect = 3e-19
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 857 agtttgatcctggctcacggtgaacgctggcggcgtgcctaagacatgcaagtc 910
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 100 agtttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtc 153
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 384 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 780
Score = 99.6 bits (50), Expect = 3e-19
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 857 agtttgatcctggctcacggtgaacgctggcggcgtgcctaagacatgcaagtc 910
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3 agtttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtc 56
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 384 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 787
Score = 99.6 bits (50), Expect = 3e-19
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 857 agtttgatcctggctcacggtgaacgctggcggcgtgcctaagacatgcaagtc 910
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 10 agtttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtc 63
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 384 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 780
Score = 99.6 bits (50), Expect = 3e-19
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 857 agtttgatcctggctcacggtgaacgctggcggcgtgcctaagacatgcaagtc 910
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3 agtttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtc 56
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 384 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 788
Score = 99.6 bits (50), Expect = 3e-19
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 857 agtttgatcctggctcacggtgaacgctggcggcgtgcctaagacatgcaagtc 910
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 11 agtttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtc 64
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-78.f
(1015 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1518 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1518 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 621 tagctgatgggacgcgggcccatccggaagcgggcagagccctttggacacaccccaagg 680
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 276
Query: 681 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 216
Query: 741 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 156
Query: 801 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 102
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 621 tagctgatgggacgcgggcccatccggaagcgggcagagccctttggacacaccccaagg 680
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 681 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 741 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 801 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 621 tagctgatgggacgcgggcccatccggaagcgggcagagccctttggacacaccccaagg 680
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 186
Query: 681 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 126
Query: 741 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 66
Query: 801 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 12
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 621 tagctgatgggacgcgggcccatccggaagcgggcagagccctttggacacaccccaagg 680
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 681 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 741 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 801 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 621 tagctgatgggacgcgggcccatccggaagcgggcagagccctttggacacaccccaagg 680
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 187
Query: 681 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 127
Query: 741 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 67
Query: 801 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 13
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-79.f
(1007 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 3e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 3e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 3e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.062
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 100 ggtgaacctgcggaaggatcattaaa 125
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatca 120
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatca 120
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatca 120
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.062
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatca 120
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-80.f
(1001 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 3e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 3e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 3e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.062
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 98 ggtgaacctgcggaaggatcattaaa 123
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatca 118
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatca 118
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatca 118
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.062
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatca 118
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-81.f
(992 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.061
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 487 tttaatgatccttccgcaggttcacc 512
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggagaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggagaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggagaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.061
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggagaccttgtta 528
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-82.f
(974 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.060
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 99 ggtgaacctgcggaaggatcattaaa 124
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.060
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-83.f
(958 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.059
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 487 tttaatgatccttccgcaggttcacc 512
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.059
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgtta 528
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-84.f
(636 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.039
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 103 ggtgaacctgcggaaggatcattaaa 128
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 87 taacaaggtttccgtaggtgaacctgcggaaggatca 123
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 87 taacaaggtttccgtaggtgaacctgcggaaggatca 123
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 87 taacaaggtttccgtaggtgaacctgcggaaggatca 123
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.039
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 87 taacaaggtttccgtaggtgaacctgcggaaggatca 123
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-85.f
(946 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1518 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1518 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 626 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 686 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 746 cggtgaaatgcgcagataccgggaggaacgccgatggcgaatgcagccacctggtccacc 805
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 806 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 875
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 626 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 686 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 746 cggtgaaatgcgcagataccgggaggaacgccgatggcgaatgcagccacctggtccacc 805
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 806 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 626 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 686 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 746 cggtgaaatgcgcagataccgggaggaacgccgatggcgaatgcagccacctggtccacc 805
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 806 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 785
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 626 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 686 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 746 cggtgaaatgcgcagataccgggaggaacgccgatggcgaatgcagccacctggtccacc 805
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 806 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 626 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 686 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 746 cggtgaaatgcgcagataccgggaggaacgccgatggcgaatgcagccacctggtccacc 805
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 806 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 786
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-86.f
(1013 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1518 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1518 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1518 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 875
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 785
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 786
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-87.f
(1021 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1515 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1515 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1515 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1515 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1515 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1515 bits (764), Expect = 0.0
Identities = 774/776 (99%), Gaps = 1/776 (0%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 276
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 216
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaaccccgcggcccg 802
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 215 gtcacccacgcgttactcacccgtccgccgctgaccacggagt-aaaaccccgcggcccg 157
Query: 803 cacgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaac 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 cacgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaac 101
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1515 bits (764), Expect = 0.0
Identities = 774/776 (99%), Gaps = 1/776 (0%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaaccccgcggcccg 802
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagt-aaaaccccgcggcccg 60
Query: 803 cacgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaac 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 cacgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaac 4
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1515 bits (764), Expect = 0.0
Identities = 774/776 (99%), Gaps = 1/776 (0%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 186
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 126
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaaccccgcggcccg 802
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 125 gtcacccacgcgttactcacccgtccgccgctgaccacggagt-aaaaccccgcggcccg 67
Query: 803 cacgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaac 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cacgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaac 11
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1515 bits (764), Expect = 0.0
Identities = 774/776 (99%), Gaps = 1/776 (0%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaaccccgcggcccg 802
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagt-aaaaccccgcggcccg 60
Query: 803 cacgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaac 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 cacgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaac 4
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1515 bits (764), Expect = 0.0
Identities = 774/776 (99%), Gaps = 1/776 (0%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 187
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 127
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaaccccgcggcccg 802
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 126 gtcacccacgcgttactcacccgtccgccgctgaccacggagt-aaaaccccgcggcccg 68
Query: 803 cacgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaac 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 cacgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaac 12
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-88.f
(1020 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1526 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1526 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1526 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 701
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 761
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 821
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 822 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 875
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 611
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 671
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 731
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 732 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 785
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 604
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 664
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 724
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 778
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 612
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 672
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 732
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 733 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 786
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-89.f
(1022 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1515 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1515 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1515 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1515 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1515 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1515 bits (764), Expect = 0.0
Identities = 774/776 (99%), Gaps = 1/776 (0%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 276
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 216
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 156
Query: 803 acgacttgcatgtctt-ggcacgccgccagcgttcaccctgagccaggatcaaact 857
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 155 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 100
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1515 bits (764), Expect = 0.0
Identities = 774/776 (99%), Gaps = 1/776 (0%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 803 acgacttgcatgtctt-ggcacgccgccagcgttcaccctgagccaggatcaaact 857
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 3
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1515 bits (764), Expect = 0.0
Identities = 774/776 (99%), Gaps = 1/776 (0%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 186
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 126
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 66
Query: 803 acgacttgcatgtctt-ggcacgccgccagcgttcaccctgagccaggatcaaact 857
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 10
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1515 bits (764), Expect = 0.0
Identities = 774/776 (99%), Gaps = 1/776 (0%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 803 acgacttgcatgtctt-ggcacgccgccagcgttcaccctgagccaggatcaaact 857
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 3
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1515 bits (764), Expect = 0.0
Identities = 774/776 (99%), Gaps = 1/776 (0%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 187
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 127
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 67
Query: 803 acgacttgcatgtctt-ggcacgccgccagcgttcaccctgagccaggatcaaact 857
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 66 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 11
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-90.f
(1048 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1511 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1511 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1511 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1511 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1511 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 621
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 276
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 216
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 156
Query: 802 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 155 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 102
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 621
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 802 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 621
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 186
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 126
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 66
Query: 802 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 65 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 12
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 621
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 179
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 119
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 59
Query: 802 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 58 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 5
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 621
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 187
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 127
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 67
Query: 802 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 66 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 13
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-91.f
(1025 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 7e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 3e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 3e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 3e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.063
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 7e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 486 tttaatgatccttccgcaggttcacc 511
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 491 tgatccttccgcaggttcacctacggaaaccttgtta 527
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 491 tgatccttccgcaggttcacctacggaaaccttgtta 527
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 3e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 491 tgatccttccgcaggttcacctacggaaaccttgtta 527
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.063
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 491 tgatccttccgcaggttcacctacggaaaccttgtta 527
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-92.f
(980 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.060
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 99 ggtgaacctgcggaaggatcattaaa 124
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.060
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-93.f
(1022 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 7e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 48 0.001
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 48 0.001
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 48 0.001
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 40 0.25
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 7e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 98 ggtgaacctgcggaaggatcattaaa 123
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 83 aacaaggtttccgtaggtgaacctgcggaaggatca 118
|||||||| |||||||| ||||||||||| ||||||
Sbjct: 1431 aacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 83 aacaaggtttccgtaggtgaacctgcggaaggatca 118
|||||||| |||||||| ||||||||||| ||||||
Sbjct: 1435 aacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 83 aacaaggtttccgtaggtgaacctgcggaaggatca 118
|||||||| |||||||| ||||||||||| ||||||
Sbjct: 1433 aacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 40.1 bits (20), Expect = 0.25
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 83 aacaaggtttccgtaggtgaacctgcggaaggatca 118
|||||||| ||||||| ||||||||||| ||||||
Sbjct: 1420 aacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-94.f
(794 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 5e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.049
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 5e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 99 ggtgaacctgcggaaggatcattaaa 124
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 547 ggtgaccctgcggaaggatcattaaa 572
||||| ||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.049
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-95.f
(980 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.060
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 99 ggtgaacctgcggaaggatcattaaa 124
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.060
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatca 119
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-96.f
(938 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 6e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.058
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 6e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 494 tttaatgatccttccgcaggttcacc 519
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 499 tgatccttccgcaggttcacctacggaaaccttgtta 535
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 499 tgatccttccgcaggttcacctacggaaaccttgtta 535
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 499 tgatccttccgcaggttcacctacggaaaccttgtta 535
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.058
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 499 tgatccttccgcaggttcacctacggaaaccttgtta 535
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
Posted date: Apr 6, 2012 4:12 PM
Number of letters in database: 305,506,631
Number of sequences in database: 298,797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 298797
Number of Hits to DB: 532,445,741
Number of extensions: 76664001
Number of successful extensions: 67943096
Number of sequences better than 10.0: 869789
Number of HSP's gapped: 62547573
Number of HSP's successfully gapped: 54042826
Length of database: 305,506,631
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 13 (26.3 bits)
S2: 17 (34.2 bits)