BLASTN 2.2.20 [Feb-08-2009]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-30.f
         (1028 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...   729   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...   729   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...   729   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...   729   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...   729   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score =  729 bits (368), Expect = 0.0
 Identities = 368/368 (100%)
 Strand = Plus / Minus

                                                                       
Query: 85  cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316

                                                                       
Query: 145 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256

                                                                       
Query: 205 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 264
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196

                                                                       
Query: 265 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136

                                                                       
Query: 325 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76

                                                                       
Query: 385 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16

                   
Query: 445 ggatcaaa 452
           ||||||||
Sbjct: 15  ggatcaaa 8
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score =  729 bits (368), Expect = 0.0
 Identities = 368/368 (100%)
 Strand = Plus / Minus

                                                                       
Query: 85  cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316

                                                                       
Query: 145 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256

                                                                       
Query: 205 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 264
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196

                                                                       
Query: 265 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136

                                                                       
Query: 325 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76

                                                                       
Query: 385 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16

                   
Query: 445 ggatcaaa 452
           ||||||||
Sbjct: 15  ggatcaaa 8
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score =  729 bits (368), Expect = 0.0
 Identities = 368/368 (100%)
 Strand = Plus / Minus

                                                                       
Query: 85  cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316

                                                                       
Query: 145 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256

                                                                       
Query: 205 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 264
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196

                                                                       
Query: 265 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136

                                                                       
Query: 325 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76

                                                                       
Query: 385 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16

                   
Query: 445 ggatcaaa 452
           ||||||||
Sbjct: 15  ggatcaaa 8
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score =  729 bits (368), Expect = 0.0
 Identities = 368/368 (100%)
 Strand = Plus / Minus

                                                                       
Query: 85  cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316

                                                                       
Query: 145 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256

                                                                       
Query: 205 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 264
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196

                                                                       
Query: 265 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136

                                                                       
Query: 325 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76

                                                                       
Query: 385 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16

                   
Query: 445 ggatcaaa 452
           ||||||||
Sbjct: 15  ggatcaaa 8
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score =  729 bits (368), Expect = 0.0
 Identities = 368/368 (100%)
 Strand = Plus / Minus

                                                                       
Query: 85  cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316

                                                                       
Query: 145 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256

                                                                       
Query: 205 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 264
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196

                                                                       
Query: 265 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136

                                                                       
Query: 325 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76

                                                                       
Query: 385 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16

                   
Query: 445 ggatcaaa 452
           ||||||||
Sbjct: 15  ggatcaaa 8
BLAST Search Results