BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-01.f
(999 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 85 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 144
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 145 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 205 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 265 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 325 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 385 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 445 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 505 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 565 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 625 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 685 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 745 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 805 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 85 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 144
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 145 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 205 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 265 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 325 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 385 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 445 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 505 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 565 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 625 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 685 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 745 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 805 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 85 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 144
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 145 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 205 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 265 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 325 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 385 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 445 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 505 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 565 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 625 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 685 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 745 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 805 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 85 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 144
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 145 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 205 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 265 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 325 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 385 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 445 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 505 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 565 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 625 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 685 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 745 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 805 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 85 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 144
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 145 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 205 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 265 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 325 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 385 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 445 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 505 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 565 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 625 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 685 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 745 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 805 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
BLAST Search Results