BLASTX 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-04.f
(1019 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nr
17,701,311 sequences; 6,073,447,286 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_06337182.1| conserved hypothetical protein [Lactobac... 142 8e-32
ref|ZP_04645459.1| pG1 protein [Lactobacillus jensenii 269-... 138 1e-30
ref|YP_003600533.1| pg1 protein, homology to Homo sapiens [... 122 1e-25
gb|AAV44205.1| unknow protein [Oryza sativa Japonica Group] 74 2e-25
ref|YP_003602124.1| pg1 protein, homology to Homo sapiens [... 119 7e-25
>ref|ZP_06337182.1| conserved hypothetical protein [Lactobacillus jensenii
208-1]|gi|281304183|gb|EFA96294.1| conserved
hypothetical protein [Lactobacillus jensenii 208-1]
Length = 174
Score = 142 bits (359), Expect = 8e-32
Identities = 87/173 (50%), Positives = 97/173 (56%), Gaps = 4/173 (2%)
Frame = -1
Query: 824 LSRLSVTGGPGGCLRHRRSSRYLRISPLLREFXXXXXXXXXXXXXXXPRLSRGLSHGTPQ 645
LS LSV+ P LRH SS YLRI PL EF RLSR LSH T Q
Sbjct: 2 LSSLSVSYRPESRLRHWCSSIYLRIPPLHMEFHSPLLHSRLTVSDAVLRLSRRLSHQTYQ 61
Query: 644 AAYTPFTPSESG*RSRPPYYRGCWHGVGRR----YYPGTVSPLVGGFVPGSGVYTPKGFF 477
+A FTP++SG R P YYRGCWH V R Y S + P + +Y PK FF
Sbjct: 62 SACARFTPNKSGQRLPPTYYRGCWHVVSRDFLVDYRQIKASYYLYPSSPTTELYDPKTFF 121
Query: 476 LQAASLRQACAHCGRFLTAASRRSGARVSVPLWPAILSDRLPVVALVGHYPTN 318
AA L Q C HCGRF TAASRRS RVSVP+WP LS RL ++ALV Y TN
Sbjct: 122 THAALLHQTCVHCGRFPTAASRRSLGRVSVPMWPISLSTRLCIIALVSRYLTN 174
>ref|ZP_04645459.1| pG1 protein [Lactobacillus jensenii
269-3]|gi|238832245|gb|EEQ24559.1| pG1 protein
[Lactobacillus jensenii 269-3]
Length = 174
Score = 138 bits (348), Expect = 1e-30
Identities = 86/173 (49%), Positives = 96/173 (55%), Gaps = 4/173 (2%)
Frame = -1
Query: 824 LSRLSVTGGPGGCLRHRRSSRYLRISPLLREFXXXXXXXXXXXXXXXPRLSRGLSHGTPQ 645
LS LSV+ P LRH SS YLRI PL EF RLSR LSH T Q
Sbjct: 2 LSSLSVSYRPESRLRHWCSSIYLRIPPLHMEFRSPLLHSRLTVSDAVLRLSRRLSHQTYQ 61
Query: 644 AAYTPFTPSESG*RSRPPYYRGCWHGVGRR----YYPGTVSPLVGGFVPGSGVYTPKGFF 477
+A FTP++SG R P YYRGCWH V R Y S + P + +Y PK FF
Sbjct: 62 SACARFTPNKSGQRLPPTYYRGCWHVVSRDFLVDYRQIKASYYLYPSSPTTELYDPKTFF 121
Query: 476 LQAASLRQACAHCGRFLTAASRRSGARVSVPLWPAILSDRLPVVALVGHYPTN 318
AA L Q HCGRF TAASRRS RVSVP+WP LS RL ++ALV Y TN
Sbjct: 122 THAALLHQTFVHCGRFPTAASRRSLGRVSVPMWPISLSTRLCIIALVSRYLTN 174
>ref|YP_003600533.1| pg1 protein, homology to Homo sapiens [Lactobacillus crispatus
ST1]|gi|295692302|ref|YP_003600912.1| pg1 protein,
homology to Homo sapiens [Lactobacillus crispatus
ST1]|gi|295692314|ref|YP_003600924.1| pg1 protein,
homology to Homo sapiens [Lactobacillus crispatus
ST1]|gi|295030029|emb|CBL49508.1| PG1 protein, homology
to Homo sapiens [Lactobacillus crispatus
ST1]|gi|295030408|emb|CBL49887.1| PG1 protein, homology
to Homo sapiens [Lactobacillus crispatus
ST1]|gi|295030420|emb|CBL49899.1| PG1 protein, homology
to Homo sapiens [Lactobacillus crispatus ST1]
Length = 144
Score = 122 bits (305), Expect = 1e-25
Identities = 68/125 (54%), Positives = 77/125 (61%), Gaps = 4/125 (3%)
Frame = -1
Query: 680 RLSRGLSHGTPQAAYTPFTPSESG*RSRPPYYRGCWHGVGRR----YYPGTVSPLVGGFV 513
RLSRGLSH T +A FTP++SG R P YYRGCWH V R Y S +
Sbjct: 20 RLSRGLSHQTYSSACARFTPNKSGQRLPPTYYRGCWHVVSRDFLVDYRQIKASYYLYPSS 79
Query: 512 PGSGVYTPKGFFLQAASLRQACAHCGRFLTAASRRSGARVSVPLWPAILSDRLPVVALVG 333
P + +Y PK FF AA L Q C HCGRF TAASRRS RVSVP+WP LS RL ++ALV
Sbjct: 80 PTTELYDPKTFFTHAALLHQTCVHCGRFPTAASRRSLGRVSVPMWPISLSTRLCIIALVS 139
Query: 332 HYPTN 318
Y TN
Sbjct: 140 LYLTN 144
>gb|AAV44205.1| unknow protein [Oryza sativa Japonica Group]
Length = 265
Score = 73.6 bits (179), Expect(2) = 2e-25
Identities = 47/107 (43%), Positives = 54/107 (50%)
Frame = -3
Query: 885 SVHREPRIKLPGYLIRFAPHAFAPQRHGWTRWLPSPSAFLPVSAHFTATXXXXXXXXXXX 706
S+HR R+ L G LI FAP AF Q + SP F P+S HFTA
Sbjct: 24 SIHRL-RLGLLGSLIPFAPLAFVSQCQCRPSRVLSPLVFFPISMHFTAPPEIPSAPTVLQ 82
Query: 705 XXXXPRSPTVEPWSFTWDAPGRLHALYAQ*IRVTLAPSVLPRLLARS 565
R VEPW T D L LYAQ R+TLA SVLPRLLA++
Sbjct: 83 LGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSVLPRLLAQN 129
Score = 68.9 bits (167), Expect(2) = 2e-25
Identities = 37/59 (62%), Positives = 42/59 (71%)
Frame = -1
Query: 512 PGSGVYTPKGFFLQAASLRQACAHCGRFLTAASRRSGARVSVPLWPAILSDRLPVVALV 336
P V P F L AA LRQA AHCG+F TAASRRS RVSVP+W ILSD+L ++ALV
Sbjct: 136 PRKEVDDPWAFHLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIALV 194
>ref|YP_003602124.1| pg1 protein, homology to Homo sapiens [Lactobacillus crispatus
ST1]|gi|295031620|emb|CBL51099.1| PG1 protein, homology
to Homo sapiens [Lactobacillus crispatus ST1]
Length = 144
Score = 119 bits (299), Expect = 7e-25
Identities = 67/125 (53%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Frame = -1
Query: 680 RLSRGLSHGTPQAAYTPFTPSESG*RSRPPYYRGCWHGVGRR----YYPGTVSPLVGGFV 513
RLSRGLSH T +A FTP++SG R P YYRGCWH V R Y S +
Sbjct: 20 RLSRGLSHQTYSSACARFTPNKSGQRLPPTYYRGCWHVVSRDFLVDYRQIKASYYLYPSS 79
Query: 512 PGSGVYTPKGFFLQAASLRQACAHCGRFLTAASRRSGARVSVPLWPAILSDRLPVVALVG 333
P + +Y PK FF AA L Q C HCGRF TAASR S RVSVP+WP LS RL ++ALV
Sbjct: 80 PTTELYDPKTFFTHAALLHQTCVHCGRFPTAASRMSLGRVSVPMWPISLSTRLCIIALVS 139
Query: 332 HYPTN 318
Y TN
Sbjct: 140 LYLTN 144
BLAST Search Results