BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-03.f
(1042 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1503 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1503 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1503 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1503 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1503 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1503 bits (758), Expect = 0.0
Identities = 771/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 854
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1503 bits (758), Expect = 0.0
Identities = 771/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 854
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1503 bits (758), Expect = 0.0
Identities = 771/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 854
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1503 bits (758), Expect = 0.0
Identities = 771/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 854
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1503 bits (758), Expect = 0.0
Identities = 771/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 854
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
BLAST Search Results