BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-39.f
(1106 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
BLAST Search Results