BLASTX 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-87.f
(1021 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nr
17,701,311 sequences; 6,073,447,286 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_06337182.1| conserved hypothetical protein [Lactobac... 142 8e-32
ref|ZP_04645459.1| pG1 protein [Lactobacillus jensenii 269-... 138 1e-30
gb|AAV44205.1| unknow protein [Oryza sativa Japonica Group] 78 7e-27
ref|YP_003600533.1| pg1 protein, homology to Homo sapiens [... 122 1e-25
ref|YP_003602124.1| pg1 protein, homology to Homo sapiens [... 119 7e-25
>ref|ZP_06337182.1| conserved hypothetical protein [Lactobacillus jensenii
208-1]|gi|281304183|gb|EFA96294.1| conserved
hypothetical protein [Lactobacillus jensenii 208-1]
Length = 174
Score = 142 bits (359), Expect = 8e-32
Identities = 87/173 (50%), Positives = 97/173 (56%), Gaps = 4/173 (2%)
Frame = +2
Query: 116 LSRLSVTGGPGGCLRHRRSSRYLRISPLLREFXXXXXXXXXXXXXXXXRLSRGLSHGTPQ 295
LS LSV+ P LRH SS YLRI PL EF RLSR LSH T Q
Sbjct: 2 LSSLSVSYRPESRLRHWCSSIYLRIPPLHMEFHSPLLHSRLTVSDAVLRLSRRLSHQTYQ 61
Query: 296 AAYTPFTPSESG*RSRPPYYRGCWHGVGRR----YYPGTVSPLVGGFVPGSGVYTPKGFF 463
+A FTP++SG R P YYRGCWH V R Y S + P + +Y PK FF
Sbjct: 62 SACARFTPNKSGQRLPPTYYRGCWHVVSRDFLVDYRQIKASYYLYPSSPTTELYDPKTFF 121
Query: 464 LQAASLRQACAHCGRFLTAASRRSGARVSVPLWPAILSDRLPVVALVGHYPTN 622
AA L Q C HCGRF TAASRRS RVSVP+WP LS RL ++ALV Y TN
Sbjct: 122 THAALLHQTCVHCGRFPTAASRRSLGRVSVPMWPISLSTRLCIIALVSRYLTN 174
>ref|ZP_04645459.1| pG1 protein [Lactobacillus jensenii
269-3]|gi|238832245|gb|EEQ24559.1| pG1 protein
[Lactobacillus jensenii 269-3]
Length = 174
Score = 138 bits (348), Expect = 1e-30
Identities = 86/173 (49%), Positives = 96/173 (55%), Gaps = 4/173 (2%)
Frame = +2
Query: 116 LSRLSVTGGPGGCLRHRRSSRYLRISPLLREFXXXXXXXXXXXXXXXXRLSRGLSHGTPQ 295
LS LSV+ P LRH SS YLRI PL EF RLSR LSH T Q
Sbjct: 2 LSSLSVSYRPESRLRHWCSSIYLRIPPLHMEFRSPLLHSRLTVSDAVLRLSRRLSHQTYQ 61
Query: 296 AAYTPFTPSESG*RSRPPYYRGCWHGVGRR----YYPGTVSPLVGGFVPGSGVYTPKGFF 463
+A FTP++SG R P YYRGCWH V R Y S + P + +Y PK FF
Sbjct: 62 SACARFTPNKSGQRLPPTYYRGCWHVVSRDFLVDYRQIKASYYLYPSSPTTELYDPKTFF 121
Query: 464 LQAASLRQACAHCGRFLTAASRRSGARVSVPLWPAILSDRLPVVALVGHYPTN 622
AA L Q HCGRF TAASRRS RVSVP+WP LS RL ++ALV Y TN
Sbjct: 122 THAALLHQTFVHCGRFPTAASRRSLGRVSVPMWPISLSTRLCIIALVSRYLTN 174
>gb|AAV44205.1| unknow protein [Oryza sativa Japonica Group]
Length = 265
Score = 78.2 bits (191), Expect(2) = 7e-27
Identities = 58/147 (39%), Positives = 63/147 (42%)
Frame = +2
Query: 428 PGSGVYTPKGFFLQAASLRQACAHCGRFLTAASRRSGARVSVPLWPAILSDRLPVVALVG 607
P V P F L AA LRQA AHCG+F TAASRRS RVSVP+W ILSD+L ++ALV
Sbjct: 136 PRKEVDDPWAFHLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIALV- 194
Query: 608 HYPTN*LMGRGPIRKRAKPFGHTPRGGSTWXXXXXXXXXXXXXXXVTHALLTRPPLTTE* 787
LTR
Sbjct: 195 --------------------------------------------------LTRYSPVRHW 204
Query: 788 KPRGPHDLHVLGTPPAFTLSQDQTTLE 868
K P DLHVL PPAF LSQDQT E
Sbjct: 205 KHHFPFDLHVLSMPPAFILSQDQTLHE 231
Score = 69.3 bits (168), Expect(2) = 7e-27
Identities = 42/96 (43%), Positives = 47/96 (48%)
Frame = +1
Query: 88 GYLIRFAPHAFAPQRHGWTRWLPSPSAFLPVSAHFTATXXXXXXXXXXXXXXXXRSPTVE 267
G LI FAP AF Q + SP F P+S HFTA R VE
Sbjct: 34 GSLIPFAPLAFVSQCQCRPSRVLSPLVFFPISMHFTAPPEIPSAPTVLQLGSFHRLSRVE 93
Query: 268 PWSFTWDAPGRLHALYAQ*IRVTLAPSVLPRLLARS 375
PW T D L LYAQ R+TLA SVLPRLLA++
Sbjct: 94 PWDLTADLKSHLQTLYAQSFRITLASSVLPRLLAQN 129
>ref|YP_003600533.1| pg1 protein, homology to Homo sapiens [Lactobacillus crispatus
ST1]|gi|295692302|ref|YP_003600912.1| pg1 protein,
homology to Homo sapiens [Lactobacillus crispatus
ST1]|gi|295692314|ref|YP_003600924.1| pg1 protein,
homology to Homo sapiens [Lactobacillus crispatus
ST1]|gi|295030029|emb|CBL49508.1| PG1 protein, homology
to Homo sapiens [Lactobacillus crispatus
ST1]|gi|295030408|emb|CBL49887.1| PG1 protein, homology
to Homo sapiens [Lactobacillus crispatus
ST1]|gi|295030420|emb|CBL49899.1| PG1 protein, homology
to Homo sapiens [Lactobacillus crispatus ST1]
Length = 144
Score = 122 bits (305), Expect = 1e-25
Identities = 68/125 (54%), Positives = 77/125 (61%), Gaps = 4/125 (3%)
Frame = +2
Query: 260 RLSRGLSHGTPQAAYTPFTPSESG*RSRPPYYRGCWHGVGRR----YYPGTVSPLVGGFV 427
RLSRGLSH T +A FTP++SG R P YYRGCWH V R Y S +
Sbjct: 20 RLSRGLSHQTYSSACARFTPNKSGQRLPPTYYRGCWHVVSRDFLVDYRQIKASYYLYPSS 79
Query: 428 PGSGVYTPKGFFLQAASLRQACAHCGRFLTAASRRSGARVSVPLWPAILSDRLPVVALVG 607
P + +Y PK FF AA L Q C HCGRF TAASRRS RVSVP+WP LS RL ++ALV
Sbjct: 80 PTTELYDPKTFFTHAALLHQTCVHCGRFPTAASRRSLGRVSVPMWPISLSTRLCIIALVS 139
Query: 608 HYPTN 622
Y TN
Sbjct: 140 LYLTN 144
>ref|YP_003602124.1| pg1 protein, homology to Homo sapiens [Lactobacillus crispatus
ST1]|gi|295031620|emb|CBL51099.1| PG1 protein, homology
to Homo sapiens [Lactobacillus crispatus ST1]
Length = 144
Score = 119 bits (299), Expect = 7e-25
Identities = 67/125 (53%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Frame = +2
Query: 260 RLSRGLSHGTPQAAYTPFTPSESG*RSRPPYYRGCWHGVGRR----YYPGTVSPLVGGFV 427
RLSRGLSH T +A FTP++SG R P YYRGCWH V R Y S +
Sbjct: 20 RLSRGLSHQTYSSACARFTPNKSGQRLPPTYYRGCWHVVSRDFLVDYRQIKASYYLYPSS 79
Query: 428 PGSGVYTPKGFFLQAASLRQACAHCGRFLTAASRRSGARVSVPLWPAILSDRLPVVALVG 607
P + +Y PK FF AA L Q C HCGRF TAASR S RVSVP+WP LS RL ++ALV
Sbjct: 80 PTTELYDPKTFFTHAALLHQTCVHCGRFPTAASRMSLGRVSVPMWPISLSTRLCIIALVS 139
Query: 608 HYPTN 622
Y TN
Sbjct: 140 LYLTN 144
BLAST Search Results