BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-01.f
(999 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 85 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 144
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 145 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 205 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 265 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 325 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 385 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 445 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 505 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 565 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 625 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 685 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 745 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 805 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 85 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 144
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 145 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 205 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 265 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 325 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 385 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 445 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 505 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 565 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 625 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 685 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 745 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 805 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 85 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 144
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 145 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 205 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 265 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 325 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 385 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 445 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 505 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 565 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 625 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 685 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 745 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 805 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 85 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 144
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 145 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 205 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 265 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 325 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 385 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 445 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 505 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 565 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 625 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 685 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 745 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 805 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 85 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 144
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 145 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 205 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 265 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 325 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 385 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 445 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 505 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 565 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 625 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 685 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 745 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 805 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-02.f
(1014 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 626 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 686 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 746 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 806 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 626 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 686 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 746 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 806 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 626 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 686 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 746 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 806 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 626 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 686 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 746 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 806 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 626 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 686 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 746 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 806 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-03.f
(1042 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1503 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1503 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1503 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1503 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1503 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1503 bits (758), Expect = 0.0
Identities = 771/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 854
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1503 bits (758), Expect = 0.0
Identities = 771/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 854
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1503 bits (758), Expect = 0.0
Identities = 771/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 854
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1503 bits (758), Expect = 0.0
Identities = 771/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 854
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1503 bits (758), Expect = 0.0
Identities = 771/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 854
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-04.f
(1019 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1530 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1530 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1530 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1530 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1530 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1530 bits (772), Expect = 0.0
Identities = 775/776 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 783
Score = 77.8 bits (39), Expect = 2e-10
Identities = 52/55 (94%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 857 agtttgatcctgggctcacggtgaacgctggcggcgtggctaagacatgcaagtc 911
||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 6 agtttgatcctgg-ctcagggtgaacgctggcggcgtgcctaagacatgcaagtc 59
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1530 bits (772), Expect = 0.0
Identities = 775/776 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 783
Score = 77.8 bits (39), Expect = 2e-10
Identities = 52/55 (94%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 857 agtttgatcctgggctcacggtgaacgctggcggcgtggctaagacatgcaagtc 911
||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 6 agtttgatcctgg-ctcagggtgaacgctggcggcgtgcctaagacatgcaagtc 59
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1530 bits (772), Expect = 0.0
Identities = 775/776 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 783
Score = 77.8 bits (39), Expect = 2e-10
Identities = 52/55 (94%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 857 agtttgatcctgggctcacggtgaacgctggcggcgtggctaagacatgcaagtc 911
||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 6 agtttgatcctgg-ctcagggtgaacgctggcggcgtgcctaagacatgcaagtc 59
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1530 bits (772), Expect = 0.0
Identities = 775/776 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 783
Score = 77.8 bits (39), Expect = 2e-10
Identities = 52/55 (94%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 857 agtttgatcctgggctcacggtgaacgctggcggcgtggctaagacatgcaagtc 911
||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 6 agtttgatcctgg-ctcagggtgaacgctggcggcgtgcctaagacatgcaagtc 59
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1530 bits (772), Expect = 0.0
Identities = 775/776 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 783
Score = 77.8 bits (39), Expect = 2e-10
Identities = 52/55 (94%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 857 agtttgatcctgggctcacggtgaacgctggcggcgtggctaagacatgcaagtc 911
||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 6 agtttgatcctgg-ctcagggtgaacgctggcggcgtgcctaagacatgcaagtc 59
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-05.f
(1018 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1513 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1513 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1513 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1513 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1513 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1513 bits (763), Expect = 0.0
Identities = 773/775 (99%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccgggattagataccctggta 859
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaacc-ggattagatacccgggta 781
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1513 bits (763), Expect = 0.0
Identities = 773/775 (99%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccgggattagataccctggta 859
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaacc-ggattagatacccgggta 781
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1513 bits (763), Expect = 0.0
Identities = 773/775 (99%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccgggattagataccctggta 859
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaacc-ggattagatacccgggta 781
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1513 bits (763), Expect = 0.0
Identities = 773/775 (99%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccgggattagataccctggta 859
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaacc-ggattagatacccgggta 781
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1513 bits (763), Expect = 0.0
Identities = 773/775 (99%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccgggattagataccctggta 859
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaacc-ggattagatacccgggta 781
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-06.f
(1010 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-07.f
(1004 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 83 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 143 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 203 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 263 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 323 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 383 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 443 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 502
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 503 gcaggttcacctacggaaaccttgtta 529
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 83 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 143 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 203 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 263 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 323 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 383 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 443 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 502
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 503 gcaggttcacctacggaaaccttgtta 529
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 83 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 143 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 203 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 263 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 323 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 383 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 443 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 502
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 503 gcaggttcacctacggaaaccttgtta 529
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 83 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 143 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 203 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 263 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 323 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 383 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 443 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 502
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 503 gcaggttcacctacggaaaccttgtta 529
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 83 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 143 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 203 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 263 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 323 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 383 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 443 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 502
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 503 gcaggttcacctacggaaaccttgtta 529
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-08.f
(1045 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-09.f
(995 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 842 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 842 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 842 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 842 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 842 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 444 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 504 tcttggttctcgcatcgatgaagaac 529
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 444 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 504 tcttggttctcgcatcgatgaagaac 529
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 444 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 504 tcttggttctcgcatcgatgaagaac 529
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 444 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 504 tcttggttctcgcatcgatgaagaac 529
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 444 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 504 tcttggttctcgcatcgatgaagaac 529
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-10.f
(992 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 86 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 146 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 206 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 266 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 326 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 386 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 446 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 505
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 506 gcaggttcacctacggaaaccttgtta 532
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 86 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 146 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 206 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 266 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 326 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 386 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 446 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 505
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 506 gcaggttcacctacggaaaccttgtta 532
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 86 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 146 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 206 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 266 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 326 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 386 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 446 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 505
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 506 gcaggttcacctacggaaaccttgtta 532
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 86 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 146 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 206 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 266 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 326 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 386 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 446 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 505
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 506 gcaggttcacctacggaaaccttgtta 532
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 86 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 146 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 206 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 266 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 326 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 386 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 446 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 505
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 506 gcaggttcacctacggaaaccttgtta 532
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-11.f
(961 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-12.f
(364 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JQ039902.1| Saccharomyces cerevisiae strain 6G2l interna... 480 e-132
gb|JQ070126.1| Saccharomyces cerevisiae strain ATCC MYA-485... 480 e-132
gb|JQ070102.1| Saccharomyces cerevisiae strain ATCC 200970 ... 480 e-132
gb|JQ070087.1| Saccharomyces cerevisiae strain ATCC MYA-111... 480 e-132
gb|JQ070086.1| Saccharomyces boulardii strain ATCC MYA-796 ... 480 e-132
>gb|JQ039902.1| Saccharomyces cerevisiae strain 6G2l internal transcribed spacer 1,
partial sequence; 5.8S ribosomal RNA gene, complete
sequence; and internal transcribed spacer 2, partial
sequence
Length = 706
Score = 480 bits (242), Expect = e-132
Identities = 254/258 (98%)
Strand = Plus / Minus
Query: 91 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 307
Query: 151 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 247
Query: 211 tgtttgttacctctgggcccctattgctctaatgcccaaagaaaaagttgcaaagatatg 270
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 246 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 187
Query: 271 aaaactccacagtgtgttgtattgaatcggttttaattgtcctaaaacaaaagcacagaa 330
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 186 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 127
Query: 331 atctctcaccgtttggaa 348
||||||||||||||||||
Sbjct: 126 atctctcaccgtttggaa 109
>gb|JQ070126.1| Saccharomyces cerevisiae strain ATCC MYA-4852 internal transcribed
spacer 1, partial sequence; 5.8S ribosomal RNA gene and
internal transcribed spacer 2, complete sequence; and
26S ribosomal RNA gene, partial sequence
Length = 754
Score = 480 bits (242), Expect = e-132
Identities = 254/258 (98%)
Strand = Plus / Minus
Query: 91 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 334
Query: 151 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 274
Query: 211 tgtttgttacctctgggcccctattgctctaatgcccaaagaaaaagttgcaaagatatg 270
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 273 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 214
Query: 271 aaaactccacagtgtgttgtattgaatcggttttaattgtcctaaaacaaaagcacagaa 330
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 213 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 154
Query: 331 atctctcaccgtttggaa 348
||||||||||||||||||
Sbjct: 153 atctctcaccgtttggaa 136
>gb|JQ070102.1| Saccharomyces cerevisiae strain ATCC 200970 internal transcribed
spacer 1, partial sequence; 5.8S ribosomal RNA gene and
internal transcribed spacer 2, complete sequence; and
26S ribosomal RNA gene, partial sequence
Length = 754
Score = 480 bits (242), Expect = e-132
Identities = 254/258 (98%)
Strand = Plus / Minus
Query: 91 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 335
Query: 151 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 275
Query: 211 tgtttgttacctctgggcccctattgctctaatgcccaaagaaaaagttgcaaagatatg 270
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 274 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 215
Query: 271 aaaactccacagtgtgttgtattgaatcggttttaattgtcctaaaacaaaagcacagaa 330
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 214 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 155
Query: 331 atctctcaccgtttggaa 348
||||||||||||||||||
Sbjct: 154 atctctcaccgtttggaa 137
>gb|JQ070087.1| Saccharomyces cerevisiae strain ATCC MYA-1110 internal transcribed
spacer 1, partial sequence; 5.8S ribosomal RNA gene and
internal transcribed spacer 2, complete sequence; and
26S ribosomal RNA gene, partial sequence
Length = 752
Score = 480 bits (242), Expect = e-132
Identities = 254/258 (98%)
Strand = Plus / Minus
Query: 91 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 334
Query: 151 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 274
Query: 211 tgtttgttacctctgggcccctattgctctaatgcccaaagaaaaagttgcaaagatatg 270
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 273 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 214
Query: 271 aaaactccacagtgtgttgtattgaatcggttttaattgtcctaaaacaaaagcacagaa 330
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 213 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 154
Query: 331 atctctcaccgtttggaa 348
||||||||||||||||||
Sbjct: 153 atctctcaccgtttggaa 136
>gb|JQ070086.1| Saccharomyces boulardii strain ATCC MYA-796 internal transcribed
spacer 1, partial sequence; 5.8S ribosomal RNA gene,
complete sequence; and internal transcribed spacer 2,
partial sequence
Length = 741
Score = 480 bits (242), Expect = e-132
Identities = 254/258 (98%)
Strand = Plus / Minus
Query: 91 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 335
Query: 151 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 275
Query: 211 tgtttgttacctctgggcccctattgctctaatgcccaaagaaaaagttgcaaagatatg 270
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 274 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 215
Query: 271 aaaactccacagtgtgttgtattgaatcggttttaattgtcctaaaacaaaagcacagaa 330
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 214 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 155
Query: 331 atctctcaccgtttggaa 348
||||||||||||||||||
Sbjct: 154 atctctcaccgtttggaa 137
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-13.f
(1012 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 860
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 783
Score = 192 bits (97), Expect = 4e-45
Identities = 106/109 (97%)
Strand = Plus / Plus
Query: 858 agtttgatcctggctcacggtgaacgctggcggcgtgcctaagacatgcaagtcgtgctg 917
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6 agtttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgg 65
Query: 918 gccgcggggttttactccgtgttcagcggcggacgggtgagtaacgcgt 966
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 66 gccgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgt 114
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 860
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 783
Score = 192 bits (97), Expect = 4e-45
Identities = 106/109 (97%)
Strand = Plus / Plus
Query: 858 agtttgatcctggctcacggtgaacgctggcggcgtgcctaagacatgcaagtcgtgctg 917
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6 agtttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgg 65
Query: 918 gccgcggggttttactccgtgttcagcggcggacgggtgagtaacgcgt 966
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 66 gccgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgt 114
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 860
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 783
Score = 192 bits (97), Expect = 4e-45
Identities = 106/109 (97%)
Strand = Plus / Plus
Query: 858 agtttgatcctggctcacggtgaacgctggcggcgtgcctaagacatgcaagtcgtgctg 917
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6 agtttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgg 65
Query: 918 gccgcggggttttactccgtgttcagcggcggacgggtgagtaacgcgt 966
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 66 gccgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgt 114
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 860
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 783
Score = 192 bits (97), Expect = 4e-45
Identities = 106/109 (97%)
Strand = Plus / Plus
Query: 858 agtttgatcctggctcacggtgaacgctggcggcgtgcctaagacatgcaagtcgtgctg 917
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6 agtttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgg 65
Query: 918 gccgcggggttttactccgtgttcagcggcggacgggtgagtaacgcgt 966
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 66 gccgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgt 114
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 860
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 783
Score = 192 bits (97), Expect = 4e-45
Identities = 106/109 (97%)
Strand = Plus / Plus
Query: 858 agtttgatcctggctcacggtgaacgctggcggcgtgcctaagacatgcaagtcgtgctg 917
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6 agtttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgg 65
Query: 918 gccgcggggttttactccgtgttcagcggcggacgggtgagtaacgcgt 966
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 66 gccgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgt 114
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-14.f
(1011 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcaggtaccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcaggtaccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcaggtaccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcaggtaccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcaggtaccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-15.f
(1028 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcatgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcatgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcatgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcatgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcatgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-16.f
(1032 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1528 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1528 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1528 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1528 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1528 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1528 bits (771), Expect = 0.0
Identities = 774/775 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtag 858
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtag 782
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1528 bits (771), Expect = 0.0
Identities = 774/775 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtag 858
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtag 782
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1528 bits (771), Expect = 0.0
Identities = 774/775 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtag 858
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtag 782
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1528 bits (771), Expect = 0.0
Identities = 774/775 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtag 858
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtag 782
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1528 bits (771), Expect = 0.0
Identities = 774/775 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtag 858
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtag 782
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-17.f
(1046 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1503 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1503 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1503 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1503 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1503 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1503 bits (758), Expect = 0.0
Identities = 770/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 622
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatggggcgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1503 bits (758), Expect = 0.0
Identities = 770/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 622
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatggggcgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1503 bits (758), Expect = 0.0
Identities = 770/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 622
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatggggcgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1503 bits (758), Expect = 0.0
Identities = 770/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 622
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatggggcgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1503 bits (758), Expect = 0.0
Identities = 770/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 622
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatggggcgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-18.f
(1023 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 84 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 144 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 204 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 264 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 324 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 383
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 384 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 444 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 504 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 563
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 564 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 624 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 684 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 744 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 804 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 84 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 144 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 204 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 264 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 324 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 383
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 384 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 444 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 504 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 563
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 564 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 624 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 684 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 744 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 804 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 84 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 144 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 204 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 264 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 324 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 383
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 384 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 444 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 504 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 563
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 564 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 624 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 684 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 744 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 804 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 84 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 144 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 204 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 264 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 324 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 383
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 384 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 444 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 504 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 563
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 564 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 624 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 684 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 744 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 804 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 84 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 144 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 204 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 264 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 324 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 383
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 384 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 444 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 504 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 563
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 564 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 624 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 684 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 744 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 804 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-19.f
(1005 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 842 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 842 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 842 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 842 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 842 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-20.f
(631 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 791 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 791 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 791 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 791 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 791 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 791 bits (399), Expect = 0.0
Identities = 416/424 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 442 aaaaacaagaattttcttaactggaaattttaaaatattaaaaactttcaacaacggatc 501
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 502 tctt 505
||||
Sbjct: 430 tctt 433
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 791 bits (399), Expect = 0.0
Identities = 416/424 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 442 aaaaacaagaattttcttaactggaaattttaaaatattaaaaactttcaacaacggatc 501
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 502 tctt 505
||||
Sbjct: 429 tctt 432
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 791 bits (399), Expect = 0.0
Identities = 416/424 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 442 aaaaacaagaattttcttaactggaaattttaaaatattaaaaactttcaacaacggatc 501
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 502 tctt 505
||||
Sbjct: 428 tctt 431
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 791 bits (399), Expect = 0.0
Identities = 416/424 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 442 aaaaacaagaattttcttaactggaaattttaaaatattaaaaactttcaacaacggatc 501
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 502 tctt 505
||||
Sbjct: 426 tctt 429
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 791 bits (399), Expect = 0.0
Identities = 416/424 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 442 aaaaacaagaattttcttaactggaaattttaaaatattaaaaactttcaacaacggatc 501
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 502 tctt 505
||||
Sbjct: 429 tctt 432
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-21.f
(990 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-22.f
(982 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 842 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 842 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 842 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 842 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 842 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-23.f
(990 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 846 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 846 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 846 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 846 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 846 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 83 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 143 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 203 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 263 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 323 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 383 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 443 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 502
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 503 gcaggttcacctacggaaaccttgttac 530
||||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgttac 9
Score = 793 bits (400), Expect = 0.0
Identities = 420/429 (97%)
Strand = Plus / Minus
Query: 531 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 591 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 651 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 711 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacacaagcacagaa 770
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 771 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 831 aagcgcaggcccggctggactctccatctcttgtcttcttggccagtaaaagctctcatg 890
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 891 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 950
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 951 gcaggttca 959
|||||||||
Sbjct: 36 gcaggttca 28
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 83 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 143 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 203 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 263 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 323 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 383 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 443 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 502
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 503 gcaggttcacctacggaaaccttgttac 530
||||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgttac 8
Score = 793 bits (400), Expect = 0.0
Identities = 420/429 (97%)
Strand = Plus / Minus
Query: 531 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 591 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 651 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 711 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacacaagcacagaa 770
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 771 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 831 aagcgcaggcccggctggactctccatctcttgtcttcttggccagtaaaagctctcatg 890
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 891 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 950
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 951 gcaggttca 959
|||||||||
Sbjct: 35 gcaggttca 27
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 83 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 143 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 203 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 263 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 323 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 383 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 443 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 502
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 503 gcaggttcacctacggaaaccttgttac 530
||||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgttac 7
Score = 793 bits (400), Expect = 0.0
Identities = 420/429 (97%)
Strand = Plus / Minus
Query: 531 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 591 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 651 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 711 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacacaagcacagaa 770
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 771 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 831 aagcgcaggcccggctggactctccatctcttgtcttcttggccagtaaaagctctcatg 890
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 891 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 950
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 951 gcaggttca 959
|||||||||
Sbjct: 34 gcaggttca 26
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 83 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 143 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 203 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 263 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 323 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 383 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 443 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 502
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 503 gcaggttcacctacggaaaccttgttac 530
||||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgttac 5
Score = 793 bits (400), Expect = 0.0
Identities = 420/429 (97%)
Strand = Plus / Minus
Query: 531 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 591 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 651 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 711 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacacaagcacagaa 770
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 771 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 831 aagcgcaggcccggctggactctccatctcttgtcttcttggccagtaaaagctctcatg 890
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 891 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 950
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 951 gcaggttca 959
|||||||||
Sbjct: 32 gcaggttca 24
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 83 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 143 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 203 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 263 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 323 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 383 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 443 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 502
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 503 gcaggttcacctacggaaaccttgttac 530
||||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgttac 8
Score = 793 bits (400), Expect = 0.0
Identities = 420/429 (97%)
Strand = Plus / Minus
Query: 531 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 591 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 651 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 711 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacacaagcacagaa 770
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 771 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 831 aagcgcaggcccggctggactctccatctcttgtcttcttggccagtaaaagctctcatg 890
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 891 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 950
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 951 gcaggttca 959
|||||||||
Sbjct: 35 gcaggttca 27
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-24.f
(956 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-25.f
(1017 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaa-gcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaa-gcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaa-gcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaa-gcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaa-gcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-26.f
(1024 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-27.f
(1051 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1520 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1520 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1520 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1520 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1520 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1520 bits (767), Expect = 0.0
Identities = 773/775 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtag 857
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtag 782
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1520 bits (767), Expect = 0.0
Identities = 773/775 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtag 857
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtag 782
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1520 bits (767), Expect = 0.0
Identities = 773/775 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtag 857
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtag 782
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1520 bits (767), Expect = 0.0
Identities = 773/775 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtag 857
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtag 782
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1520 bits (767), Expect = 0.0
Identities = 773/775 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtag 857
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtag 782
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-28.f
(1041 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 858
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 858
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 858
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 858
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 445 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 858
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-29.f
(1043 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1513 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1513 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1513 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1513 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1513 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1513 bits (763), Expect = 0.0
Identities = 773/775 (99%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtgggggagcaaaccggattagataccctggta 858
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgt-ggggagcaaaccggattagatacccgggta 781
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1513 bits (763), Expect = 0.0
Identities = 773/775 (99%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtgggggagcaaaccggattagataccctggta 858
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgt-ggggagcaaaccggattagatacccgggta 781
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1513 bits (763), Expect = 0.0
Identities = 773/775 (99%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtgggggagcaaaccggattagataccctggta 858
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgt-ggggagcaaaccggattagatacccgggta 781
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1513 bits (763), Expect = 0.0
Identities = 773/775 (99%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtgggggagcaaaccggattagataccctggta 858
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgt-ggggagcaaaccggattagatacccgggta 781
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1513 bits (763), Expect = 0.0
Identities = 773/775 (99%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtgggggagcaaaccggattagataccctggta 858
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgt-ggggagcaaaccggattagatacccgggta 781
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-30.f
(1028 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 729 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 729 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 729 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 729 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 729 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 85 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316
Query: 145 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256
Query: 205 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196
Query: 265 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136
Query: 325 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76
Query: 385 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16
Query: 445 ggatcaaa 452
||||||||
Sbjct: 15 ggatcaaa 8
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 85 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316
Query: 145 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256
Query: 205 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196
Query: 265 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136
Query: 325 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76
Query: 385 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16
Query: 445 ggatcaaa 452
||||||||
Sbjct: 15 ggatcaaa 8
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 85 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316
Query: 145 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256
Query: 205 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196
Query: 265 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136
Query: 325 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76
Query: 385 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16
Query: 445 ggatcaaa 452
||||||||
Sbjct: 15 ggatcaaa 8
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 85 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316
Query: 145 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256
Query: 205 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196
Query: 265 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136
Query: 325 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76
Query: 385 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16
Query: 445 ggatcaaa 452
||||||||
Sbjct: 15 ggatcaaa 8
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 85 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316
Query: 145 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256
Query: 205 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196
Query: 265 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136
Query: 325 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76
Query: 385 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16
Query: 445 ggatcaaa 452
||||||||
Sbjct: 15 ggatcaaa 8
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-31.f
(1083 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 846 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 846 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 846 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 846 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 846 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 502 gcaggttcacctacggaaaccttgttac 529
||||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgttac 9
Score = 793 bits (400), Expect = 0.0
Identities = 437/449 (97%), Gaps = 2/449 (0%)
Strand = Plus / Minus
Query: 530 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 590 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 650 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 710 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 770 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 830 aagcgcatgcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 889
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 890 ctcttgccaaaacnnnnnnnntccattttcaaaattattaaatttctttaatgatccctt 949
||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 96 ctcttgccaaaac-aaaaaaatccattttcaaaattattaaatttctttaatgat-cctt 39
Query: 950 ccgcacgttcacctaccgaaaccttgtta 978
||||| |||||||||| ||||||||||||
Sbjct: 38 ccgcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 502 gcaggttcacctacggaaaccttgttac 529
||||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgttac 8
Score = 793 bits (400), Expect = 0.0
Identities = 437/449 (97%), Gaps = 2/449 (0%)
Strand = Plus / Minus
Query: 530 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 590 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 650 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 710 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 770 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 830 aagcgcatgcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 889
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 890 ctcttgccaaaacnnnnnnnntccattttcaaaattattaaatttctttaatgatccctt 949
||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 95 ctcttgccaaaac-aaaaaaatccattttcaaaattattaaatttctttaatgat-cctt 38
Query: 950 ccgcacgttcacctaccgaaaccttgtta 978
||||| |||||||||| ||||||||||||
Sbjct: 37 ccgcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 502 gcaggttcacctacggaaaccttgttac 529
||||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgttac 7
Score = 793 bits (400), Expect = 0.0
Identities = 437/449 (97%), Gaps = 2/449 (0%)
Strand = Plus / Minus
Query: 530 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 590 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 650 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 710 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 770 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 830 aagcgcatgcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 889
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 890 ctcttgccaaaacnnnnnnnntccattttcaaaattattaaatttctttaatgatccctt 949
||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 94 ctcttgccaaaac-aaaaaaatccattttcaaaattattaaatttctttaatgat-cctt 37
Query: 950 ccgcacgttcacctaccgaaaccttgtta 978
||||| |||||||||| ||||||||||||
Sbjct: 36 ccgcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 502 gcaggttcacctacggaaaccttgttac 529
||||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgttac 5
Score = 793 bits (400), Expect = 0.0
Identities = 437/449 (97%), Gaps = 2/449 (0%)
Strand = Plus / Minus
Query: 530 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 590 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 650 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 710 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 770 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 830 aagcgcatgcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 889
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 890 ctcttgccaaaacnnnnnnnntccattttcaaaattattaaatttctttaatgatccctt 949
||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 92 ctcttgccaaaac-aaaaaaatccattttcaaaattattaaatttctttaatgat-cctt 35
Query: 950 ccgcacgttcacctaccgaaaccttgtta 978
||||| |||||||||| ||||||||||||
Sbjct: 34 ccgcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 502 gcaggttcacctacggaaaccttgttac 529
||||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgttac 8
Score = 793 bits (400), Expect = 0.0
Identities = 437/449 (97%), Gaps = 2/449 (0%)
Strand = Plus / Minus
Query: 530 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 590 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 650 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 710 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 770 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 830 aagcgcatgcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 889
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 890 ctcttgccaaaacnnnnnnnntccattttcaaaattattaaatttctttaatgatccctt 949
||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 95 ctcttgccaaaac-aaaaaaatccattttcaaaattattaaatttctttaatgat-cctt 38
Query: 950 ccgcacgttcacctaccgaaaccttgtta 978
||||| |||||||||| ||||||||||||
Sbjct: 37 ccgcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-32.f
(1013 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-33.f
(1003 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 502 tcttggttctcgcatcgatgaagaacg 528
|||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaacg 456
Score = 825 bits (416), Expect = 0.0
Identities = 440/449 (97%), Gaps = 1/449 (0%)
Strand = Plus / Plus
Query: 529 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 68
Query: 589 aaaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaaga 648
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaaga 128
Query: 649 gatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttc 188
Query: 709 tttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaagacc 768
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 189 tttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaacc 248
Query: 769 gtttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcg 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gtttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcg 308
Query: 829 agcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgt 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgt 368
Query: 889 caaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggat 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 caaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggat 428
Query: 949 ctcttggtttctcgcatcgatgaagaacg 977
||||||| |||||||||||||||||||||
Sbjct: 429 ctcttgg-ttctcgcatcgatgaagaacg 456
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 502 tcttggttctcgcatcgatgaagaacg 528
|||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaacg 455
Score = 825 bits (416), Expect = 0.0
Identities = 440/449 (97%), Gaps = 1/449 (0%)
Strand = Plus / Plus
Query: 529 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 67
Query: 589 aaaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaaga 648
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaaga 127
Query: 649 gatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttc 187
Query: 709 tttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaagacc 768
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 188 tttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaacc 247
Query: 769 gtttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcg 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gtttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcg 307
Query: 829 agcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgt 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgt 367
Query: 889 caaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggat 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 caaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggat 427
Query: 949 ctcttggtttctcgcatcgatgaagaacg 977
||||||| |||||||||||||||||||||
Sbjct: 428 ctcttgg-ttctcgcatcgatgaagaacg 455
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 502 tcttggttctcgcatcgatgaagaacg 528
|||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaacg 454
Score = 825 bits (416), Expect = 0.0
Identities = 440/449 (97%), Gaps = 1/449 (0%)
Strand = Plus / Plus
Query: 529 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 66
Query: 589 aaaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaaga 648
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 aaaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaaga 126
Query: 649 gatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttc 186
Query: 709 tttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaagacc 768
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 187 tttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaacc 246
Query: 769 gtttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcg 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gtttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcg 306
Query: 829 agcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgt 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgt 366
Query: 889 caaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggat 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 caaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggat 426
Query: 949 ctcttggtttctcgcatcgatgaagaacg 977
||||||| |||||||||||||||||||||
Sbjct: 427 ctcttgg-ttctcgcatcgatgaagaacg 454
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 502 tcttggttctcgcatcgatgaagaacg 528
|||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaacg 452
Score = 825 bits (416), Expect = 0.0
Identities = 440/449 (97%), Gaps = 1/449 (0%)
Strand = Plus / Plus
Query: 529 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 64
Query: 589 aaaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaaga 648
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 aaaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaaga 124
Query: 649 gatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttc 184
Query: 709 tttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaagacc 768
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 185 tttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaacc 244
Query: 769 gtttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcg 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gtttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcg 304
Query: 829 agcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgt 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgt 364
Query: 889 caaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggat 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 caaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggat 424
Query: 949 ctcttggtttctcgcatcgatgaagaacg 977
||||||| |||||||||||||||||||||
Sbjct: 425 ctcttgg-ttctcgcatcgatgaagaacg 452
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 502 tcttggttctcgcatcgatgaagaacg 528
|||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaacg 455
Score = 825 bits (416), Expect = 0.0
Identities = 440/449 (97%), Gaps = 1/449 (0%)
Strand = Plus / Plus
Query: 529 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 67
Query: 589 aaaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaaga 648
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaaga 127
Query: 649 gatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttc 187
Query: 709 tttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaagacc 768
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 188 tttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaacc 247
Query: 769 gtttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcg 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gtttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcg 307
Query: 829 agcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgt 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgt 367
Query: 889 caaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggat 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 caaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggat 427
Query: 949 ctcttggtttctcgcatcgatgaagaacg 977
||||||| |||||||||||||||||||||
Sbjct: 428 ctcttgg-ttctcgcatcgatgaagaacg 455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-34.f
(991 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 835 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 835 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 835 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 835 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 835 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 322 tttcaatacaacacactgtggagttttcatatcttcgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 502 tcttggttctcgcatcgatgaagaac 527
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 322 tttcaatacaacacactgtggagttttcatatcttcgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 502 tcttggttctcgcatcgatgaagaac 527
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 322 tttcaatacaacacactgtggagttttcatatcttcgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 502 tcttggttctcgcatcgatgaagaac 527
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 322 tttcaatacaacacactgtggagttttcatatcttcgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 502 tcttggttctcgcatcgatgaagaac 527
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 322 tttcaatacaacacactgtggagttttcatatcttcgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 502 tcttggttctcgcatcgatgaagaac 527
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-35.f
(965 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-36.f
(942 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 842 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 842 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 842 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 842 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 842 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 86 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 146 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 205
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 206 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 266 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 326 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 386 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 446 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 506 tcttggttctcgcatcgatgaagaac 531
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 86 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 146 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 205
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 206 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 266 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 326 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 386 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 446 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 506 tcttggttctcgcatcgatgaagaac 531
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 86 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 146 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 205
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 206 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 266 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 326 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 386 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 446 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 506 tcttggttctcgcatcgatgaagaac 531
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 86 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 146 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 205
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 206 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 266 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 326 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 386 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 446 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 506 tcttggttctcgcatcgatgaagaac 531
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 86 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 146 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 205
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 206 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 266 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 326 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 386 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 446 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 506 tcttggttctcgcatcgatgaagaac 531
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-37.f
(1012 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-38.f
(1027 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-39.f
(1106 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 772/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctga-gcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-40.f
(1037 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-41.f
(1037 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 84 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 144 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 204 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 264 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 324 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 384 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 444 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 504 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 564 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 624 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 684 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 744 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 804 acgacttgcatgtcttgggcacgccgccagcgttcaccctgagccaggatcaaa 857
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 84 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 144 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 204 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 264 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 324 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 384 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 444 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 504 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 564 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 624 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 684 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 744 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 804 acgacttgcatgtcttgggcacgccgccagcgttcaccctgagccaggatcaaa 857
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 84 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 144 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 204 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 264 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 324 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 384 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 444 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 504 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 564 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 624 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 684 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 744 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 804 acgacttgcatgtcttgggcacgccgccagcgttcaccctgagccaggatcaaa 857
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 84 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 144 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 204 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 264 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 324 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 384 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 444 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 504 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 564 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 624 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 684 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 744 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 804 acgacttgcatgtcttgggcacgccgccagcgttcaccctgagccaggatcaaa 857
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 84 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 144 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 204 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 264 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 324 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 384 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 444 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 504 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 564 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 624 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 684 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 744 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 804 acgacttgcatgtcttgggcacgccgccagcgttcaccctgagccaggatcaaa 857
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-42.f
(1038 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-43.f
(1033 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 846 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 846 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 846 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 846 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 846 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 84 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 144 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 204 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 264 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 324 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 384 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 444 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 503
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 504 gcaggttcacctacggaaaccttgttac 531
||||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgttac 9
Score = 787 bits (397), Expect = 0.0
Identities = 438/450 (97%), Gaps = 3/450 (0%)
Strand = Plus / Minus
Query: 532 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 592 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 652 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 712 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 772 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 832 aagcgcatgcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 891
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 892 ctcttgccaaaacnnnnnnnntccatttttcaaaattattaaatttctttaatgatcctt 951
||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaac-aaaaaaatcca-ttttcaaaattattaaatttctttaatgatcctt 39
Query: 952 ccgca-gttcacctacagaaaccttgttac 980
||||| |||||||||| |||||||||||||
Sbjct: 38 ccgcaggttcacctacggaaaccttgttac 9
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 84 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 144 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 204 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 264 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 324 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 384 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 444 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 503
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 504 gcaggttcacctacggaaaccttgttac 531
||||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgttac 8
Score = 787 bits (397), Expect = 0.0
Identities = 438/450 (97%), Gaps = 3/450 (0%)
Strand = Plus / Minus
Query: 532 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 592 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 652 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 712 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 772 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 832 aagcgcatgcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 891
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 892 ctcttgccaaaacnnnnnnnntccatttttcaaaattattaaatttctttaatgatcctt 951
||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaac-aaaaaaatcca-ttttcaaaattattaaatttctttaatgatcctt 38
Query: 952 ccgca-gttcacctacagaaaccttgttac 980
||||| |||||||||| |||||||||||||
Sbjct: 37 ccgcaggttcacctacggaaaccttgttac 8
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 84 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 144 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 204 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 264 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 324 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 384 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 444 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 503
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 504 gcaggttcacctacggaaaccttgttac 531
||||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgttac 7
Score = 787 bits (397), Expect = 0.0
Identities = 438/450 (97%), Gaps = 3/450 (0%)
Strand = Plus / Minus
Query: 532 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 592 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 652 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 712 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 772 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 832 aagcgcatgcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 891
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 892 ctcttgccaaaacnnnnnnnntccatttttcaaaattattaaatttctttaatgatcctt 951
||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaac-aaaaaaatcca-ttttcaaaattattaaatttctttaatgatcctt 37
Query: 952 ccgca-gttcacctacagaaaccttgttac 980
||||| |||||||||| |||||||||||||
Sbjct: 36 ccgcaggttcacctacggaaaccttgttac 7
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 84 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 144 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 204 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 264 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 324 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 384 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 444 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 503
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 504 gcaggttcacctacggaaaccttgttac 531
||||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgttac 5
Score = 787 bits (397), Expect = 0.0
Identities = 438/450 (97%), Gaps = 3/450 (0%)
Strand = Plus / Minus
Query: 532 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 592 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 652 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 712 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 772 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 832 aagcgcatgcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 891
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 892 ctcttgccaaaacnnnnnnnntccatttttcaaaattattaaatttctttaatgatcctt 951
||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaac-aaaaaaatcca-ttttcaaaattattaaatttctttaatgatcctt 35
Query: 952 ccgca-gttcacctacagaaaccttgttac 980
||||| |||||||||| |||||||||||||
Sbjct: 34 ccgcaggttcacctacggaaaccttgttac 5
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 84 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 144 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 204 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 264 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 324 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 384 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 444 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 503
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 504 gcaggttcacctacggaaaccttgttac 531
||||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgttac 8
Score = 787 bits (397), Expect = 0.0
Identities = 438/450 (97%), Gaps = 3/450 (0%)
Strand = Plus / Minus
Query: 532 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 592 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 652 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 712 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 772 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 832 aagcgcatgcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 891
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 892 ctcttgccaaaacnnnnnnnntccatttttcaaaattattaaatttctttaatgatcctt 951
||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaac-aaaaaaatcca-ttttcaaaattattaaatttctttaatgatcctt 38
Query: 952 ccgca-gttcacctacagaaaccttgttac 980
||||| |||||||||| |||||||||||||
Sbjct: 37 ccgcaggttcacctacggaaaccttgttac 8
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-44.f
(1030 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 837 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 837 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 837 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 837 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 837 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 837 bits (422), Expect = 0.0
Identities = 439/447 (98%)
Strand = Plus / Minus
Query: 86 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 146 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 206 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 266 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 326 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 386 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 446 ctcgtgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 505
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 506 gcaggttcacctacggaaaccttgtta 532
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 837 bits (422), Expect = 0.0
Identities = 439/447 (98%)
Strand = Plus / Minus
Query: 86 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 146 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 206 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 266 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 326 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 386 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 446 ctcgtgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 505
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 506 gcaggttcacctacggaaaccttgtta 532
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 837 bits (422), Expect = 0.0
Identities = 439/447 (98%)
Strand = Plus / Minus
Query: 86 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 146 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 206 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 266 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 326 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 386 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 446 ctcgtgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 505
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 506 gcaggttcacctacggaaaccttgtta 532
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 837 bits (422), Expect = 0.0
Identities = 439/447 (98%)
Strand = Plus / Minus
Query: 86 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 146 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 206 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 266 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 326 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 386 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 446 ctcgtgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 505
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 506 gcaggttcacctacggaaaccttgtta 532
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 837 bits (422), Expect = 0.0
Identities = 439/447 (98%)
Strand = Plus / Minus
Query: 86 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 146 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 206 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 266 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 326 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 386 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 446 ctcgtgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 505
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 506 gcaggttcacctacggaaaccttgtta 532
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-45.f
(1010 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 831 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 831 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 831 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 831 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 831 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 831 bits (419), Expect = 0.0
Identities = 433/440 (98%)
Strand = Plus / Minus
Query: 83 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 389
Query: 143 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 329
Query: 203 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 269
Query: 263 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 209
Query: 323 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 149
Query: 383 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 89
Query: 443 aaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttccgcaggttc 502
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 aaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttccgcaggttc 29
Query: 503 acctacggaaaccttgttac 522
||||||||||||||||||||
Sbjct: 28 acctacggaaaccttgttac 9
Score = 815 bits (411), Expect = 0.0
Identities = 438/448 (97%), Gaps = 1/448 (0%)
Strand = Plus / Minus
Query: 523 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 583 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 643 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 703 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 763 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 823 aagcgcatgcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 882
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 883 ctcttgccaaaacnnnnnnnntccattttcaaaattattaaatttctttaatgatccttc 942
||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaac-aaaaaaatccattttcaaaattattaaatttctttaatgatccttc 38
Query: 943 cgcacgttcacctacggaaaccttgtta 970
|||| |||||||||||||||||||||||
Sbjct: 37 cgcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 831 bits (419), Expect = 0.0
Identities = 433/440 (98%)
Strand = Plus / Minus
Query: 83 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 388
Query: 143 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 328
Query: 203 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 268
Query: 263 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 208
Query: 323 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 148
Query: 383 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 88
Query: 443 aaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttccgcaggttc 502
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 aaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttccgcaggttc 28
Query: 503 acctacggaaaccttgttac 522
||||||||||||||||||||
Sbjct: 27 acctacggaaaccttgttac 8
Score = 815 bits (411), Expect = 0.0
Identities = 438/448 (97%), Gaps = 1/448 (0%)
Strand = Plus / Minus
Query: 523 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 583 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 643 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 703 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 763 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 823 aagcgcatgcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 882
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 883 ctcttgccaaaacnnnnnnnntccattttcaaaattattaaatttctttaatgatccttc 942
||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaac-aaaaaaatccattttcaaaattattaaatttctttaatgatccttc 37
Query: 943 cgcacgttcacctacggaaaccttgtta 970
|||| |||||||||||||||||||||||
Sbjct: 36 cgcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 831 bits (419), Expect = 0.0
Identities = 433/440 (98%)
Strand = Plus / Minus
Query: 83 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 387
Query: 143 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 327
Query: 203 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 267
Query: 263 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 207
Query: 323 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 147
Query: 383 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 87
Query: 443 aaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttccgcaggttc 502
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 aaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttccgcaggttc 27
Query: 503 acctacggaaaccttgttac 522
||||||||||||||||||||
Sbjct: 26 acctacggaaaccttgttac 7
Score = 815 bits (411), Expect = 0.0
Identities = 438/448 (97%), Gaps = 1/448 (0%)
Strand = Plus / Minus
Query: 523 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 583 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 643 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 703 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 763 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 823 aagcgcatgcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 882
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 883 ctcttgccaaaacnnnnnnnntccattttcaaaattattaaatttctttaatgatccttc 942
||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaac-aaaaaaatccattttcaaaattattaaatttctttaatgatccttc 36
Query: 943 cgcacgttcacctacggaaaccttgtta 970
|||| |||||||||||||||||||||||
Sbjct: 35 cgcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 831 bits (419), Expect = 0.0
Identities = 433/440 (98%)
Strand = Plus / Minus
Query: 83 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 385
Query: 143 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 325
Query: 203 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 265
Query: 263 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 205
Query: 323 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 145
Query: 383 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 85
Query: 443 aaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttccgcaggttc 502
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 aaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttccgcaggttc 25
Query: 503 acctacggaaaccttgttac 522
||||||||||||||||||||
Sbjct: 24 acctacggaaaccttgttac 5
Score = 815 bits (411), Expect = 0.0
Identities = 438/448 (97%), Gaps = 1/448 (0%)
Strand = Plus / Minus
Query: 523 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 583 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 643 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 703 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 763 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 823 aagcgcatgcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 882
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 883 ctcttgccaaaacnnnnnnnntccattttcaaaattattaaatttctttaatgatccttc 942
||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaac-aaaaaaatccattttcaaaattattaaatttctttaatgatccttc 34
Query: 943 cgcacgttcacctacggaaaccttgtta 970
|||| |||||||||||||||||||||||
Sbjct: 33 cgcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 831 bits (419), Expect = 0.0
Identities = 433/440 (98%)
Strand = Plus / Minus
Query: 83 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 388
Query: 143 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 328
Query: 203 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 268
Query: 263 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 208
Query: 323 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 148
Query: 383 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 88
Query: 443 aaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttccgcaggttc 502
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 aaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttccgcaggttc 28
Query: 503 acctacggaaaccttgttac 522
||||||||||||||||||||
Sbjct: 27 acctacggaaaccttgttac 8
Score = 815 bits (411), Expect = 0.0
Identities = 438/448 (97%), Gaps = 1/448 (0%)
Strand = Plus / Minus
Query: 523 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 583 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 643 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 703 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 763 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 823 aagcgcatgcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 882
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 883 ctcttgccaaaacnnnnnnnntccattttcaaaattattaaatttctttaatgatccttc 942
||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaac-aaaaaaatccattttcaaaattattaaatttctttaatgatccttc 37
Query: 943 cgcacgttcacctacggaaaccttgtta 970
|||| |||||||||||||||||||||||
Sbjct: 36 cgcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-46.f
(997 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 84 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 144 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 204 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 264 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 324 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 384 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 444 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 503
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 504 gcaggttcacctacggaaaccttgtta 530
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 84 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 144 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 204 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 264 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 324 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 384 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 444 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 503
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 504 gcaggttcacctacggaaaccttgtta 530
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 84 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 144 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 204 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 264 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 324 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 384 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 444 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 503
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 504 gcaggttcacctacggaaaccttgtta 530
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 84 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 144 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 204 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 264 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 324 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 384 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 444 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 503
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 504 gcaggttcacctacggaaaccttgtta 530
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 84 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 144 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 204 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 264 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 324 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 384 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 444 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 503
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 504 gcaggttcacctacggaaaccttgtta 530
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-47.f
(969 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 829 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 829 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 829 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 829 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 829 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Plus
Query: 85 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 145 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 204
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 205 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 265 ttcttgctattccaaacggtgagaggtttctgtgcttttgttataggacaattaaaaccg 324
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 325 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 385 gcaatcggggcccagagataacaaacacaaacaattttatctattcattaaatttttgtc 444
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 445 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 505 tcttggttctcgcatcgatgaagaacg 531
|||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaacg 456
Score = 769 bits (388), Expect = 0.0
Identities = 421/433 (97%), Gaps = 1/433 (0%)
Strand = Plus / Plus
Query: 532 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 68
Query: 592 aaaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaaga 651
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaaga 128
Query: 652 gatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttc 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttc 188
Query: 712 tttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaacc 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaacc 248
Query: 772 gtttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcg 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gtttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcg 308
Query: 832 agcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgt 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgt 368
Query: 892 caaaaacaagaattttcgtaactggggattttaaaatattaaaaaactttcaacacggga 951
||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||
Sbjct: 369 caaaaacaagaattttcgtaactggaaattttaaaatatt-aaaaactttcaacaacgga 427
Query: 952 tctcttggttctc 964
|||||||||||||
Sbjct: 428 tctcttggttctc 440
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Plus
Query: 85 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 145 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 204
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 205 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 265 ttcttgctattccaaacggtgagaggtttctgtgcttttgttataggacaattaaaaccg 324
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 325 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 385 gcaatcggggcccagagataacaaacacaaacaattttatctattcattaaatttttgtc 444
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 445 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 505 tcttggttctcgcatcgatgaagaacg 531
|||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaacg 455
Score = 769 bits (388), Expect = 0.0
Identities = 421/433 (97%), Gaps = 1/433 (0%)
Strand = Plus / Plus
Query: 532 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 67
Query: 592 aaaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaaga 651
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaaga 127
Query: 652 gatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttc 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttc 187
Query: 712 tttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaacc 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaacc 247
Query: 772 gtttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcg 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gtttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcg 307
Query: 832 agcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgt 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgt 367
Query: 892 caaaaacaagaattttcgtaactggggattttaaaatattaaaaaactttcaacacggga 951
||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||
Sbjct: 368 caaaaacaagaattttcgtaactggaaattttaaaatatt-aaaaactttcaacaacgga 426
Query: 952 tctcttggttctc 964
|||||||||||||
Sbjct: 427 tctcttggttctc 439
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Plus
Query: 85 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 145 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 204
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 205 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 265 ttcttgctattccaaacggtgagaggtttctgtgcttttgttataggacaattaaaaccg 324
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 325 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 385 gcaatcggggcccagagataacaaacacaaacaattttatctattcattaaatttttgtc 444
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 445 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 505 tcttggttctcgcatcgatgaagaacg 531
|||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaacg 454
Score = 769 bits (388), Expect = 0.0
Identities = 421/433 (97%), Gaps = 1/433 (0%)
Strand = Plus / Plus
Query: 532 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 66
Query: 592 aaaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaaga 651
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 aaaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaaga 126
Query: 652 gatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttc 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttc 186
Query: 712 tttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaacc 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaacc 246
Query: 772 gtttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcg 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gtttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcg 306
Query: 832 agcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgt 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgt 366
Query: 892 caaaaacaagaattttcgtaactggggattttaaaatattaaaaaactttcaacacggga 951
||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||
Sbjct: 367 caaaaacaagaattttcgtaactggaaattttaaaatatt-aaaaactttcaacaacgga 425
Query: 952 tctcttggttctc 964
|||||||||||||
Sbjct: 426 tctcttggttctc 438
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Plus
Query: 85 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 145 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 204
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 205 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 265 ttcttgctattccaaacggtgagaggtttctgtgcttttgttataggacaattaaaaccg 324
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 325 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 385 gcaatcggggcccagagataacaaacacaaacaattttatctattcattaaatttttgtc 444
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 445 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 505 tcttggttctcgcatcgatgaagaacg 531
|||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaacg 452
Score = 769 bits (388), Expect = 0.0
Identities = 421/433 (97%), Gaps = 1/433 (0%)
Strand = Plus / Plus
Query: 532 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 64
Query: 592 aaaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaaga 651
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 aaaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaaga 124
Query: 652 gatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttc 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttc 184
Query: 712 tttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaacc 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaacc 244
Query: 772 gtttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcg 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gtttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcg 304
Query: 832 agcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgt 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgt 364
Query: 892 caaaaacaagaattttcgtaactggggattttaaaatattaaaaaactttcaacacggga 951
||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||
Sbjct: 365 caaaaacaagaattttcgtaactggaaattttaaaatatt-aaaaactttcaacaacgga 423
Query: 952 tctcttggttctc 964
|||||||||||||
Sbjct: 424 tctcttggttctc 436
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Plus
Query: 85 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 145 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 204
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 205 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 265 ttcttgctattccaaacggtgagaggtttctgtgcttttgttataggacaattaaaaccg 324
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 325 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 385 gcaatcggggcccagagataacaaacacaaacaattttatctattcattaaatttttgtc 444
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 445 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 505 tcttggttctcgcatcgatgaagaacg 531
|||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaacg 455
Score = 769 bits (388), Expect = 0.0
Identities = 421/433 (97%), Gaps = 1/433 (0%)
Strand = Plus / Plus
Query: 532 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 67
Query: 592 aaaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaaga 651
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaaga 127
Query: 652 gatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttc 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttc 187
Query: 712 tttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaacc 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaacc 247
Query: 772 gtttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcg 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gtttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcg 307
Query: 832 agcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgt 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgt 367
Query: 892 caaaaacaagaattttcgtaactggggattttaaaatattaaaaaactttcaacacggga 951
||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||
Sbjct: 368 caaaaacaagaattttcgtaactggaaattttaaaatatt-aaaaactttcaacaacgga 426
Query: 952 tctcttggttctc 964
|||||||||||||
Sbjct: 427 tctcttggttctc 439
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-48.f
(946 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 85 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 145 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 205 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 265 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 325 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 385 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 445 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 504
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 505 gcaggttcacctacggaaaccttgtta 531
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 85 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 145 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 205 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 265 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 325 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 385 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 445 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 504
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 505 gcaggttcacctacggaaaccttgtta 531
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 85 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 145 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 205 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 265 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 325 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 385 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 445 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 504
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 505 gcaggttcacctacggaaaccttgtta 531
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 85 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 145 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 205 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 265 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 325 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 385 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 445 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 504
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 505 gcaggttcacctacggaaaccttgtta 531
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 85 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 145 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 205 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 265 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 325 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 385 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 445 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 504
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 505 gcaggttcacctacggaaaccttgtta 531
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-49.f
(1023 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 6
Score = 107 bits (54), Expect = 2e-19
Identities = 73/78 (93%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 856 actaccagggtatctcatccggtttgctccccacactttcgcgcctcagcgtcacgggtg 915
|||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 783 actacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtg 724
Query: 916 gcacgaggtggctgcctt 933
| || |||||||||||||
Sbjct: 723 g-accaggtggctgcctt 707
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 6
Score = 107 bits (54), Expect = 2e-19
Identities = 73/78 (93%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 856 actaccagggtatctcatccggtttgctccccacactttcgcgcctcagcgtcacgggtg 915
|||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 783 actacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtg 724
Query: 916 gcacgaggtggctgcctt 933
| || |||||||||||||
Sbjct: 723 g-accaggtggctgcctt 707
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 6
Score = 107 bits (54), Expect = 2e-19
Identities = 73/78 (93%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 856 actaccagggtatctcatccggtttgctccccacactttcgcgcctcagcgtcacgggtg 915
|||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 783 actacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtg 724
Query: 916 gcacgaggtggctgcctt 933
| || |||||||||||||
Sbjct: 723 g-accaggtggctgcctt 707
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 6
Score = 107 bits (54), Expect = 2e-19
Identities = 73/78 (93%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 856 actaccagggtatctcatccggtttgctccccacactttcgcgcctcagcgtcacgggtg 915
|||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 783 actacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtg 724
Query: 916 gcacgaggtggctgcctt 933
| || |||||||||||||
Sbjct: 723 g-accaggtggctgcctt 707
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 6
Score = 107 bits (54), Expect = 2e-19
Identities = 73/78 (93%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 856 actaccagggtatctcatccggtttgctccccacactttcgcgcctcagcgtcacgggtg 915
|||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 783 actacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtg 724
Query: 916 gcacgaggtggctgcctt 933
| || |||||||||||||
Sbjct: 723 g-accaggtggctgcctt 707
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-50.f
(1021 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1314 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1314 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1314 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1314 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1314 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1314 bits (663), Expect = 0.0
Identities = 748/775 (96%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacgg 383
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcattg 443
||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgactgatcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 503
|||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaaaccgggacgaaaccccccacgaggggactgacggtaccgcggtaataccgcctgcc 563
|||| |||||||||||||||| ||||||||||||||||||||| ||||||| |||| |||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccttgccagcaaccgcggtaatacggacggcgcgagcgttacccggattcactggg 623
|||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacagctcacccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgctcacataccgggaggaacgccgatggcgaatgcagccacctggtccacc 803
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgcttatgcgcgaaaccgtggcggagcataccggagtagataccctggta 858
||||||||| | |||||||| ||||| |||||| |||||| ||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtgg-ggagcaaaccggattagatacccgggta 781
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1314 bits (663), Expect = 0.0
Identities = 748/775 (96%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacgg 383
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcattg 443
||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgactgatcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 503
|||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaaaccgggacgaaaccccccacgaggggactgacggtaccgcggtaataccgcctgcc 563
|||| |||||||||||||||| ||||||||||||||||||||| ||||||| |||| |||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccttgccagcaaccgcggtaatacggacggcgcgagcgttacccggattcactggg 623
|||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacagctcacccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgctcacataccgggaggaacgccgatggcgaatgcagccacctggtccacc 803
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgcttatgcgcgaaaccgtggcggagcataccggagtagataccctggta 858
||||||||| | |||||||| ||||| |||||| |||||| ||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtgg-ggagcaaaccggattagatacccgggta 781
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1314 bits (663), Expect = 0.0
Identities = 748/775 (96%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacgg 383
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcattg 443
||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgactgatcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 503
|||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaaaccgggacgaaaccccccacgaggggactgacggtaccgcggtaataccgcctgcc 563
|||| |||||||||||||||| ||||||||||||||||||||| ||||||| |||| |||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccttgccagcaaccgcggtaatacggacggcgcgagcgttacccggattcactggg 623
|||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacagctcacccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgctcacataccgggaggaacgccgatggcgaatgcagccacctggtccacc 803
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgcttatgcgcgaaaccgtggcggagcataccggagtagataccctggta 858
||||||||| | |||||||| ||||| |||||| |||||| ||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtgg-ggagcaaaccggattagatacccgggta 781
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1314 bits (663), Expect = 0.0
Identities = 748/775 (96%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacgg 383
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcattg 443
||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgactgatcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 503
|||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaaaccgggacgaaaccccccacgaggggactgacggtaccgcggtaataccgcctgcc 563
|||| |||||||||||||||| ||||||||||||||||||||| ||||||| |||| |||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccttgccagcaaccgcggtaatacggacggcgcgagcgttacccggattcactggg 623
|||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacagctcacccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgctcacataccgggaggaacgccgatggcgaatgcagccacctggtccacc 803
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgcttatgcgcgaaaccgtggcggagcataccggagtagataccctggta 858
||||||||| | |||||||| ||||| |||||| |||||| ||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtgg-ggagcaaaccggattagatacccgggta 781
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1314 bits (663), Expect = 0.0
Identities = 748/775 (96%), Gaps = 1/775 (0%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacgg 383
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcattg 443
||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgactgatcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 503
|||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaaaccgggacgaaaccccccacgaggggactgacggtaccgcggtaataccgcctgcc 563
|||| |||||||||||||||| ||||||||||||||||||||| ||||||| |||| |||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccttgccagcaaccgcggtaatacggacggcgcgagcgttacccggattcactggg 623
|||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacagctcacccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgctcacataccgggaggaacgccgatggcgaatgcagccacctggtccacc 803
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgcttatgcgcgaaaccgtggcggagcataccggagtagataccctggta 858
||||||||| | |||||||| ||||| |||||| |||||| ||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtgg-ggagcaaaccggattagatacccgggta 781
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-51.f
(1034 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggcccacc 803
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 857
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggcccacc 803
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 857
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggcccacc 803
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 857
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggcccacc 803
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 857
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggcccacc 803
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 857
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-52.f
(1049 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-53.f
(1071 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 857
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 857
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 857
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 857
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 857
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-54.f
(1063 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1530 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1530 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1530 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1530 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1530 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1530 bits (772), Expect = 0.0
Identities = 775/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 6
Score = 135 bits (68), Expect = 8e-28
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 864 ggtatctaatccggtatgctccccacgctttcgcgcctcatcgtcacgggtggacgaggt 923
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 775 ggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtggaccaggt 716
Query: 924 ggatgccttcgccatcagcgttcctccc 951
|| ||||||||||||| |||||||||||
Sbjct: 715 ggctgccttcgccatcggcgttcctccc 688
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1530 bits (772), Expect = 0.0
Identities = 775/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 6
Score = 135 bits (68), Expect = 8e-28
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 864 ggtatctaatccggtatgctccccacgctttcgcgcctcatcgtcacgggtggacgaggt 923
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 775 ggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtggaccaggt 716
Query: 924 ggatgccttcgccatcagcgttcctccc 951
|| ||||||||||||| |||||||||||
Sbjct: 715 ggctgccttcgccatcggcgttcctccc 688
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1530 bits (772), Expect = 0.0
Identities = 775/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 6
Score = 135 bits (68), Expect = 8e-28
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 864 ggtatctaatccggtatgctccccacgctttcgcgcctcatcgtcacgggtggacgaggt 923
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 775 ggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtggaccaggt 716
Query: 924 ggatgccttcgccatcagcgttcctccc 951
|| ||||||||||||| |||||||||||
Sbjct: 715 ggctgccttcgccatcggcgttcctccc 688
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1530 bits (772), Expect = 0.0
Identities = 775/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 6
Score = 135 bits (68), Expect = 8e-28
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 864 ggtatctaatccggtatgctccccacgctttcgcgcctcatcgtcacgggtggacgaggt 923
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 775 ggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtggaccaggt 716
Query: 924 ggatgccttcgccatcagcgttcctccc 951
|| ||||||||||||| |||||||||||
Sbjct: 715 ggctgccttcgccatcggcgttcctccc 688
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1530 bits (772), Expect = 0.0
Identities = 775/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 6
Score = 135 bits (68), Expect = 8e-28
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 864 ggtatctaatccggtatgctccccacgctttcgcgcctcatcgtcacgggtggacgaggt 923
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 775 ggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtggaccaggt 716
Query: 924 ggatgccttcgccatcagcgttcctccc 951
|| ||||||||||||| |||||||||||
Sbjct: 715 ggctgccttcgccatcggcgttcctccc 688
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-55.f
(1036 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 842 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 842 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 842 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 842 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 842 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-56.f
(1013 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 842 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 842 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 842 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 842 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 842 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 444 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 504 tcttggttctcgcatcgatgaagaac 529
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 444 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 504 tcttggttctcgcatcgatgaagaac 529
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 444 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 504 tcttggttctcgcatcgatgaagaac 529
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 444 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 504 tcttggttctcgcatcgatgaagaac 529
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 444 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 504 tcttggttctcgcatcgatgaagaac 529
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-57.f
(1003 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 842 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 842 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 842 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 842 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 842 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-58.f
(987 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 83 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 143 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 203 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 263 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 323 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 383 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 443 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 502
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 503 gcaggttcacctacggaaaccttgtta 529
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 83 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 143 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 203 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 263 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 323 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 383 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 443 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 502
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 503 gcaggttcacctacggaaaccttgtta 529
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 83 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 143 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 203 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 263 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 323 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 383 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 443 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 502
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 503 gcaggttcacctacggaaaccttgtta 529
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 83 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 143 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 203 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 263 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 323 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 383 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 443 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 502
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 503 gcaggttcacctacggaaaccttgtta 529
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 83 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 143 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 203 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 263 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 323 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 383 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 443 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 502
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 503 gcaggttcacctacggaaaccttgtta 529
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-59.f
(998 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-60.f
(961 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-61.f
(389 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And E... 86 2e-13
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 86 2e-13
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 86 2e-13
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 86 2e-13
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 86 2e-13
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 1522
Score = 85.7 bits (43), Expect = 2e-13
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 255 ttggggtgtgtccaaaggcctttgcccctttccggatggccccccgtcccatcccctatt 314
|||||||||||||||||| |||||||| |||||||||| ||| ||||||||| ||| |
Sbjct: 189 ttggggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagt 248
Query: 315 tggtggggtaatgccccttcaaggcaacgac 345
||||||||||||| ||| |||||| |||||
Sbjct: 249 tggtggggtaatggcccaccaaggcgacgac 279
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 85.7 bits (43), Expect = 2e-13
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 255 ttggggtgtgtccaaaggcctttgcccctttccggatggccccccgtcccatcccctatt 314
|||||||||||||||||| |||||||| |||||||||| ||| ||||||||| ||| |
Sbjct: 184 ttggggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagt 243
Query: 315 tggtggggtaatgccccttcaaggcaacgac 345
||||||||||||| ||| |||||| |||||
Sbjct: 244 tggtggggtaatggcccaccaaggcgacgac 274
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 85.7 bits (43), Expect = 2e-13
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 255 ttggggtgtgtccaaaggcctttgcccctttccggatggccccccgtcccatcccctatt 314
|||||||||||||||||| |||||||| |||||||||| ||| ||||||||| ||| |
Sbjct: 184 ttggggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagt 243
Query: 315 tggtggggtaatgccccttcaaggcaacgac 345
||||||||||||| ||| |||||| |||||
Sbjct: 244 tggtggggtaatggcccaccaaggcgacgac 274
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 85.7 bits (43), Expect = 2e-13
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 255 ttggggtgtgtccaaaggcctttgcccctttccggatggccccccgtcccatcccctatt 314
|||||||||||||||||| |||||||| |||||||||| ||| ||||||||| ||| |
Sbjct: 184 ttggggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagt 243
Query: 315 tggtggggtaatgccccttcaaggcaacgac 345
||||||||||||| ||| |||||| |||||
Sbjct: 244 tggtggggtaatggcccaccaaggcgacgac 274
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 85.7 bits (43), Expect = 2e-13
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 255 ttggggtgtgtccaaaggcctttgcccctttccggatggccccccgtcccatcccctatt 314
|||||||||||||||||| |||||||| |||||||||| ||| ||||||||| ||| |
Sbjct: 184 ttggggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagt 243
Query: 315 tggtggggtaatgccccttcaaggcaacgac 345
||||||||||||| ||| |||||| |||||
Sbjct: 244 tggtggggtaatggcccaccaaggcgacgac 274
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-62.f
(1078 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-63.f
(1035 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-64.f
(1034 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-65.f
(1059 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 682 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 742 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 801
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 802 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-66.f
(1024 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-67.f
(1047 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-68.f
(1009 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 835 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 835 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 835 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 835 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 835 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtctccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtctccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtctccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtctccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtctccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-69.f
(994 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 842 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 842 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 842 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 842 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 842 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 444 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 504 tcttggttctcgcatcgatgaagaac 529
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 444 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 504 tcttggttctcgcatcgatgaagaac 529
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 444 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 504 tcttggttctcgcatcgatgaagaac 529
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 444 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 504 tcttggttctcgcatcgatgaagaac 529
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 444 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 504 tcttggttctcgcatcgatgaagaac 529
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-70.f
(976 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 842 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 842 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 842 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 842 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 842 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 444 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 504 tcttggttctcgcatcgatgaagaac 529
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 444 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 504 tcttggttctcgcatcgatgaagaac 529
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 444 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 504 tcttggttctcgcatcgatgaagaac 529
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 444 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 504 tcttggttctcgcatcgatgaagaac 529
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 444 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 504 tcttggttctcgcatcgatgaagaac 529
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-71.f
(960 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 829 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 829 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 829 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 829 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 829 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 262 aaaactccacagtgtgttgtattgaaacggatttaattgtcctataacaaaagcacagaa 321
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 502 gcaggttcacctacggagaccttgtta 528
||||||||||||||||| |||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 262 aaaactccacagtgtgttgtattgaaacggatttaattgtcctataacaaaagcacagaa 321
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 502 gcaggttcacctacggagaccttgtta 528
||||||||||||||||| |||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 262 aaaactccacagtgtgttgtattgaaacggatttaattgtcctataacaaaagcacagaa 321
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 502 gcaggttcacctacggagaccttgtta 528
||||||||||||||||| |||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 262 aaaactccacagtgtgttgtattgaaacggatttaattgtcctataacaaaagcacagaa 321
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 502 gcaggttcacctacggagaccttgtta 528
||||||||||||||||| |||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 262 aaaactccacagtgtgttgtattgaaacggatttaattgtcctataacaaaagcacagaa 321
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 502 gcaggttcacctacggagaccttgtta 528
||||||||||||||||| |||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-72.f
(944 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 83 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 143 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 203 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 263 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 323 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 383 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 443 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 502
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 503 gcaggttcacctacggaaaccttgtta 529
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 83 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 143 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 203 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 263 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 323 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 383 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 443 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 502
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 503 gcaggttcacctacggaaaccttgtta 529
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 83 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 143 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 203 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 263 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 323 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 383 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 443 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 502
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 503 gcaggttcacctacggaaaccttgtta 529
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 83 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 143 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 203 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 263 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 323 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 383 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 443 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 502
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 503 gcaggttcacctacggaaaccttgtta 529
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 83 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 143 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 203 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 263 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 323 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 383 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 443 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 502
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 503 gcaggttcacctacggaaaccttgtta 529
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-73.f
(1007 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1495 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1495 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1495 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1495 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1495 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1495 bits (754), Expect = 0.0
Identities = 770/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggaatggggcccgtgtctcaatgcccctgtgg 561
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttaggcacgccgcca-cgttcaccctgagccaggatcaaa 854
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1495 bits (754), Expect = 0.0
Identities = 770/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggaatggggcccgtgtctcaatgcccctgtgg 561
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttaggcacgccgcca-cgttcaccctgagccaggatcaaa 854
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1495 bits (754), Expect = 0.0
Identities = 770/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggaatggggcccgtgtctcaatgcccctgtgg 561
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttaggcacgccgcca-cgttcaccctgagccaggatcaaa 854
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1495 bits (754), Expect = 0.0
Identities = 770/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggaatggggcccgtgtctcaatgcccctgtgg 561
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttaggcacgccgcca-cgttcaccctgagccaggatcaaa 854
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1495 bits (754), Expect = 0.0
Identities = 770/774 (99%), Gaps = 1/774 (0%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggaatggggcccgtgtctcaatgcccctgtgg 561
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttaggcacgccgcca-cgttcaccctgagccaggatcaaa 854
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-74.f
(1019 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-75.f
(1034 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 445 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 504
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 860
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 783
Score = 73.8 bits (37), Expect = 2e-09
Identities = 53/57 (92%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 858 agtttcatcctggactcacggtgaacgctggcggcgtgcctaagacatgcaaatcgt 914
||||| ||||||| |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 6 agtttgatcctgg-ctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgt 61
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 445 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 504
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 860
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 783
Score = 73.8 bits (37), Expect = 2e-09
Identities = 53/57 (92%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 858 agtttcatcctggactcacggtgaacgctggcggcgtgcctaagacatgcaaatcgt 914
||||| ||||||| |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 6 agtttgatcctgg-ctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgt 61
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 445 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 504
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 860
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 783
Score = 73.8 bits (37), Expect = 2e-09
Identities = 53/57 (92%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 858 agtttcatcctggactcacggtgaacgctggcggcgtgcctaagacatgcaaatcgt 914
||||| ||||||| |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 6 agtttgatcctgg-ctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgt 61
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 445 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 504
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 860
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 783
Score = 73.8 bits (37), Expect = 2e-09
Identities = 53/57 (92%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 858 agtttcatcctggactcacggtgaacgctggcggcgtgcctaagacatgcaaatcgt 914
||||| ||||||| |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 6 agtttgatcctgg-ctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgt 61
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 85 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 145 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 205 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 265 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 325 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 385 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 445 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 504
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 505 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 565 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 625 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 685 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 745 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 805 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 860
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 783
Score = 73.8 bits (37), Expect = 2e-09
Identities = 53/57 (92%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 858 agtttcatcctggactcacggtgaacgctggcggcgtgcctaagacatgcaaatcgt 914
||||| ||||||| |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 6 agtttgatcctgg-ctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgt 61
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-76.f
(1044 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 6
Score = 73.8 bits (37), Expect = 2e-09
Identities = 76/85 (89%), Gaps = 3/85 (3%)
Strand = Plus / Minus
Query: 864 ggtatctaatccggtttgctcctcacgctttcgcgcatgatcgtcacgggttgcaccagg 923
|||||||||||||||||||||| ||||||||||||| | | ||||||||| || ||||||
Sbjct: 775 ggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacggg-tggaccagg 717
Query: 924 tgggctgcctttcgccatcagcgtt 948
| ||||||| ||||||||| |||||
Sbjct: 716 t-ggctgcc-ttcgccatcggcgtt 694
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 6
Score = 73.8 bits (37), Expect = 2e-09
Identities = 76/85 (89%), Gaps = 3/85 (3%)
Strand = Plus / Minus
Query: 864 ggtatctaatccggtttgctcctcacgctttcgcgcatgatcgtcacgggttgcaccagg 923
|||||||||||||||||||||| ||||||||||||| | | ||||||||| || ||||||
Sbjct: 775 ggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacggg-tggaccagg 717
Query: 924 tgggctgcctttcgccatcagcgtt 948
| ||||||| ||||||||| |||||
Sbjct: 716 t-ggctgcc-ttcgccatcggcgtt 694
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 6
Score = 73.8 bits (37), Expect = 2e-09
Identities = 76/85 (89%), Gaps = 3/85 (3%)
Strand = Plus / Minus
Query: 864 ggtatctaatccggtttgctcctcacgctttcgcgcatgatcgtcacgggttgcaccagg 923
|||||||||||||||||||||| ||||||||||||| | | ||||||||| || ||||||
Sbjct: 775 ggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacggg-tggaccagg 717
Query: 924 tgggctgcctttcgccatcagcgtt 948
| ||||||| ||||||||| |||||
Sbjct: 716 t-ggctgcc-ttcgccatcggcgtt 694
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 6
Score = 73.8 bits (37), Expect = 2e-09
Identities = 76/85 (89%), Gaps = 3/85 (3%)
Strand = Plus / Minus
Query: 864 ggtatctaatccggtttgctcctcacgctttcgcgcatgatcgtcacgggttgcaccagg 923
|||||||||||||||||||||| ||||||||||||| | | ||||||||| || ||||||
Sbjct: 775 ggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacggg-tggaccagg 717
Query: 924 tgggctgcctttcgccatcagcgtt 948
| ||||||| ||||||||| |||||
Sbjct: 716 t-ggctgcc-ttcgccatcggcgtt 694
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtcttacgcacgccgccagcgttcaccctgagccaggatcaaact 858
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 6
Score = 73.8 bits (37), Expect = 2e-09
Identities = 76/85 (89%), Gaps = 3/85 (3%)
Strand = Plus / Minus
Query: 864 ggtatctaatccggtttgctcctcacgctttcgcgcatgatcgtcacgggttgcaccagg 923
|||||||||||||||||||||| ||||||||||||| | | ||||||||| || ||||||
Sbjct: 775 ggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacggg-tggaccagg 717
Query: 924 tgggctgcctttcgccatcagcgtt 948
| ||||||| ||||||||| |||||
Sbjct: 716 t-ggctgcc-ttcgccatcggcgtt 694
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-77.f
(1024 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1522 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 783
Score = 99.6 bits (50), Expect = 4e-17
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 857 agtttgatcctggctcacggtgaacgctggcggcgtgcctaagacatgcaagtc 910
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6 agtttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtc 59
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 783
Score = 99.6 bits (50), Expect = 4e-17
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 857 agtttgatcctggctcacggtgaacgctggcggcgtgcctaagacatgcaagtc 910
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6 agtttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtc 59
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 783
Score = 99.6 bits (50), Expect = 4e-17
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 857 agtttgatcctggctcacggtgaacgctggcggcgtgcctaagacatgcaagtc 910
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6 agtttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtc 59
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 783
Score = 99.6 bits (50), Expect = 4e-17
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 857 agtttgatcctggctcacggtgaacgctggcggcgtgcctaagacatgcaagtc 910
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6 agtttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtc 59
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1522 bits (768), Expect = 0.0
Identities = 774/776 (99%)
Strand = Plus / Plus
Query: 84 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 144 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 204 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 264 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 324 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 384 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 443
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 444 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 504 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 564 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 624 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 684 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 744 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 804 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggtagt 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggtagt 783
Score = 99.6 bits (50), Expect = 4e-17
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 857 agtttgatcctggctcacggtgaacgctggcggcgtgcctaagacatgcaagtc 910
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6 agtttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtc 59
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-78.f
(1015 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatgggacgcgggcccatccggaagcgggcagagccctttggacacaccccaagg 680
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 681 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 741 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 801 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatgggacgcgggcccatccggaagcgggcagagccctttggacacaccccaagg 680
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 681 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 741 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 801 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatgggacgcgggcccatccggaagcgggcagagccctttggacacaccccaagg 680
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 681 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 741 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 801 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatgggacgcgggcccatccggaagcgggcagagccctttggacacaccccaagg 680
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 681 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 741 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 801 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatgggacgcgggcccatccggaagcgggcagagccctttggacacaccccaagg 680
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 681 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 741 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 801 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-79.f
(1007 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 821 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 821 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 821 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 821 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 821 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 821 bits (414), Expect = 0.0
Identities = 438/447 (97%), Gaps = 1/447 (0%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcgagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 444 aaaaacaagaattttcgtaactgggaaattttaaaatattaaaaactttcaacaacggat 503
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaact-ggaaattttaaaatattaaaaactttcaacaacggat 428
Query: 504 ctcttggttctcgcatcgatgaagaac 530
|||||||||||||||||||||||||||
Sbjct: 429 ctcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 821 bits (414), Expect = 0.0
Identities = 438/447 (97%), Gaps = 1/447 (0%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcgagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 444 aaaaacaagaattttcgtaactgggaaattttaaaatattaaaaactttcaacaacggat 503
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaact-ggaaattttaaaatattaaaaactttcaacaacggat 427
Query: 504 ctcttggttctcgcatcgatgaagaac 530
|||||||||||||||||||||||||||
Sbjct: 428 ctcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 821 bits (414), Expect = 0.0
Identities = 438/447 (97%), Gaps = 1/447 (0%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcgagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 444 aaaaacaagaattttcgtaactgggaaattttaaaatattaaaaactttcaacaacggat 503
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaact-ggaaattttaaaatattaaaaactttcaacaacggat 426
Query: 504 ctcttggttctcgcatcgatgaagaac 530
|||||||||||||||||||||||||||
Sbjct: 427 ctcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 821 bits (414), Expect = 0.0
Identities = 438/447 (97%), Gaps = 1/447 (0%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcgagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 444 aaaaacaagaattttcgtaactgggaaattttaaaatattaaaaactttcaacaacggat 503
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaact-ggaaattttaaaatattaaaaactttcaacaacggat 424
Query: 504 ctcttggttctcgcatcgatgaagaac 530
|||||||||||||||||||||||||||
Sbjct: 425 ctcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 821 bits (414), Expect = 0.0
Identities = 438/447 (97%), Gaps = 1/447 (0%)
Strand = Plus / Plus
Query: 84 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 144 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcgagaagacaagag 203
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 204 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 264 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 324 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 384 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 444 aaaaacaagaattttcgtaactgggaaattttaaaatattaaaaactttcaacaacggat 503
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaact-ggaaattttaaaatattaaaaactttcaacaacggat 427
Query: 504 ctcttggttctcgcatcgatgaagaac 530
|||||||||||||||||||||||||||
Sbjct: 428 ctcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-80.f
(1001 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 842 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 842 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 842 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 842 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 842 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 502 tcttggttctcgcatcgatgaagaac 527
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 502 tcttggttctcgcatcgatgaagaac 527
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 502 tcttggttctcgcatcgatgaagaac 527
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 502 tcttggttctcgcatcgatgaagaac 527
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 502 tcttggttctcgcatcgatgaagaac 527
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-81.f
(992 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 829 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 829 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 829 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 829 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 829 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaactgtcctataacaaaagcacagaa 321
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 502 gcaggttcacctacggagaccttgtta 528
||||||||||||||||| |||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaactgtcctataacaaaagcacagaa 321
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 502 gcaggttcacctacggagaccttgtta 528
||||||||||||||||| |||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaactgtcctataacaaaagcacagaa 321
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 502 gcaggttcacctacggagaccttgtta 528
||||||||||||||||| |||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaactgtcctataacaaaagcacagaa 321
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 502 gcaggttcacctacggagaccttgtta 528
||||||||||||||||| |||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaactgtcctataacaaaagcacagaa 321
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 502 gcaggttcacctacggagaccttgtta 528
||||||||||||||||| |||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-82.f
(974 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 842 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 842 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 842 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 842 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 842 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-83.f
(958 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 502 gcaggttcacctacggaaaccttgtta 528
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-84.f
(636 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 797 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 797 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 797 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 797 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 797 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 797 bits (402), Expect = 0.0
Identities = 434/447 (97%)
Strand = Plus / Plus
Query: 87 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 147 aaatggannnnnnngttttggcaagagcatgaaagcttttactgggcaagaagacaagag 206
||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 207 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 267 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 327 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcta 386
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 387 gcaatcgtggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 446
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 447 aagaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 506
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 507 tcttggttctcgcatcaatgaacaacg 533
|||||||||||||||| ||||| ||||
Sbjct: 430 tcttggttctcgcatcgatgaagaacg 456
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 797 bits (402), Expect = 0.0
Identities = 434/447 (97%)
Strand = Plus / Plus
Query: 87 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 147 aaatggannnnnnngttttggcaagagcatgaaagcttttactgggcaagaagacaagag 206
||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 207 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 267 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 327 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcta 386
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 387 gcaatcgtggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 446
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 447 aagaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 506
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 507 tcttggttctcgcatcaatgaacaacg 533
|||||||||||||||| ||||| ||||
Sbjct: 429 tcttggttctcgcatcgatgaagaacg 455
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 797 bits (402), Expect = 0.0
Identities = 434/447 (97%)
Strand = Plus / Plus
Query: 87 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 147 aaatggannnnnnngttttggcaagagcatgaaagcttttactgggcaagaagacaagag 206
||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 207 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 267 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 327 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcta 386
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 387 gcaatcgtggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 446
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 447 aagaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 506
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 507 tcttggttctcgcatcaatgaacaacg 533
|||||||||||||||| ||||| ||||
Sbjct: 428 tcttggttctcgcatcgatgaagaacg 454
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 797 bits (402), Expect = 0.0
Identities = 434/447 (97%)
Strand = Plus / Plus
Query: 87 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 147 aaatggannnnnnngttttggcaagagcatgaaagcttttactgggcaagaagacaagag 206
||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 207 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 267 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 327 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcta 386
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 387 gcaatcgtggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 446
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 447 aagaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 506
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 507 tcttggttctcgcatcaatgaacaacg 533
|||||||||||||||| ||||| ||||
Sbjct: 426 tcttggttctcgcatcgatgaagaacg 452
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 797 bits (402), Expect = 0.0
Identities = 434/447 (97%)
Strand = Plus / Plus
Query: 87 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 147 aaatggannnnnnngttttggcaagagcatgaaagcttttactgggcaagaagacaagag 206
||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 207 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 267 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 327 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcta 386
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 387 gcaatcgtggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 446
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 447 aagaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 506
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 507 tcttggttctcgcatcaatgaacaacg 533
|||||||||||||||| ||||| ||||
Sbjct: 429 tcttggttctcgcatcgatgaagaacg 455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-85.f
(946 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 626 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 686 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 746 cggtgaaatgcgcagataccgggaggaacgccgatggcgaatgcagccacctggtccacc 805
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 806 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 626 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 686 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 746 cggtgaaatgcgcagataccgggaggaacgccgatggcgaatgcagccacctggtccacc 805
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 806 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 626 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 686 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 746 cggtgaaatgcgcagataccgggaggaacgccgatggcgaatgcagccacctggtccacc 805
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 806 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 626 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 686 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 746 cggtgaaatgcgcagataccgggaggaacgccgatggcgaatgcagccacctggtccacc 805
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 806 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 626 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 686 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 746 cggtgaaatgcgcagataccgggaggaacgccgatggcgaatgcagccacctggtccacc 805
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 806 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-86.f
(1013 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1518 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1518 bits (766), Expect = 0.0
Identities = 772/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaagcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-87.f
(1021 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1515 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1515 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1515 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1515 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1515 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1515 bits (764), Expect = 0.0
Identities = 774/776 (99%), Gaps = 1/776 (0%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaaccccgcggcccg 802
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagt-aaaaccccgcggcccg 63
Query: 803 cacgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaac 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cacgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaac 7
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1515 bits (764), Expect = 0.0
Identities = 774/776 (99%), Gaps = 1/776 (0%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaaccccgcggcccg 802
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagt-aaaaccccgcggcccg 63
Query: 803 cacgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaac 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cacgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaac 7
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1515 bits (764), Expect = 0.0
Identities = 774/776 (99%), Gaps = 1/776 (0%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaaccccgcggcccg 802
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagt-aaaaccccgcggcccg 63
Query: 803 cacgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaac 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cacgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaac 7
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1515 bits (764), Expect = 0.0
Identities = 774/776 (99%), Gaps = 1/776 (0%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaaccccgcggcccg 802
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagt-aaaaccccgcggcccg 63
Query: 803 cacgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaac 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cacgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaac 7
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1515 bits (764), Expect = 0.0
Identities = 774/776 (99%), Gaps = 1/776 (0%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaaccccgcggcccg 802
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagt-aaaaccccgcggcccg 63
Query: 803 cacgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaac 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cacgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaac 7
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-88.f
(1020 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1526 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1526 bits (770), Expect = 0.0
Identities = 773/774 (99%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgtcccatgtgaaagaccacggctcaaccgtgg 607
Query: 683 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagcgtgggatacgctcaggctagacggtgggagagggtggtggaattcccggagtag 667
Query: 743 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cggtgaaatgcgcagataccgggaggaacgccgatggcgaaggcagccacctggtccacc 727
Query: 803 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagataccctggta 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cgtgacgctgaggcgcgaaagcgtggggagcaaaccggattagatacccgggta 781
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-89.f
(1022 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1515 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1515 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1515 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1515 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1515 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1515 bits (764), Expect = 0.0
Identities = 774/776 (99%), Gaps = 1/776 (0%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtctt-ggcacgccgccagcgttcaccctgagccaggatcaaact 857
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 6
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1515 bits (764), Expect = 0.0
Identities = 774/776 (99%), Gaps = 1/776 (0%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtctt-ggcacgccgccagcgttcaccctgagccaggatcaaact 857
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 6
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1515 bits (764), Expect = 0.0
Identities = 774/776 (99%), Gaps = 1/776 (0%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtctt-ggcacgccgccagcgttcaccctgagccaggatcaaact 857
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 6
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1515 bits (764), Expect = 0.0
Identities = 774/776 (99%), Gaps = 1/776 (0%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtctt-ggcacgccgccagcgttcaccctgagccaggatcaaact 857
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 6
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1515 bits (764), Expect = 0.0
Identities = 774/776 (99%), Gaps = 1/776 (0%)
Strand = Plus / Minus
Query: 83 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 143 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 203 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 263 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 323 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 383 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 443 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 503 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 563 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 623 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 683 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 743 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 803 acgacttgcatgtctt-ggcacgccgccagcgttcaccctgagccaggatcaaact 857
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaact 6
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-90.f
(1048 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1511 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 621
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 621
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 621
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 621
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1511 bits (762), Expect = 0.0
Identities = 771/774 (99%)
Strand = Plus / Minus
Query: 82 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 141
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 142 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 202 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 262 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 322 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 382 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 442 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 502 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 562 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 621
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 622 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaagcgggcaaagccctttggacacaccccaagg 182
Query: 682 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcgggtccacatgggggattagcccgagtttccccgggttgtccccctcttccgggtag 122
Query: 742 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcacccacgcgttactcacccgtccgccgctgaccacggagtaaaaccccgcggcccgc 62
Query: 802 acgacttgcatgtcttatgcacgccgccagcgttcaccctgagccaggatcaaa 855
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgacttgcatgtcttaggcacgccgccagcgttcaccctgagccaggatcaaa 8
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-91.f
(1025 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-92.f
(980 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 835 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 835 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 835 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 835 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 835 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttccttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttccttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttccttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttccttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttccttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-93.f
(1022 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 841 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 841 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 841 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 841 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 841 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 841 bits (424), Expect = 0.0
Identities = 438/445 (98%)
Strand = Plus / Plus
Query: 83 aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 70
Query: 143 aatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagaga 202
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 aatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagaga 130
Query: 203 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 190
Query: 263 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 250
Query: 323 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 310
Query: 383 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 370
Query: 443 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 430
Query: 503 cttggttctcgcatcgatgaagaac 527
|||||||||||||||||||||||||
Sbjct: 431 cttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 841 bits (424), Expect = 0.0
Identities = 438/445 (98%)
Strand = Plus / Plus
Query: 83 aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 69
Query: 143 aatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagaga 202
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagaga 129
Query: 203 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 189
Query: 263 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 249
Query: 323 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 309
Query: 383 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 369
Query: 443 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 429
Query: 503 cttggttctcgcatcgatgaagaac 527
|||||||||||||||||||||||||
Sbjct: 430 cttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 841 bits (424), Expect = 0.0
Identities = 438/445 (98%)
Strand = Plus / Plus
Query: 83 aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 68
Query: 143 aatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagaga 202
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagaga 128
Query: 203 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 188
Query: 263 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 248
Query: 323 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 308
Query: 383 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 368
Query: 443 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 428
Query: 503 cttggttctcgcatcgatgaagaac 527
|||||||||||||||||||||||||
Sbjct: 429 cttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 841 bits (424), Expect = 0.0
Identities = 438/445 (98%)
Strand = Plus / Plus
Query: 83 aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 66
Query: 143 aatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagaga 202
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 aatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagaga 126
Query: 203 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 186
Query: 263 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 246
Query: 323 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 306
Query: 383 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 366
Query: 443 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 426
Query: 503 cttggttctcgcatcgatgaagaac 527
|||||||||||||||||||||||||
Sbjct: 427 cttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 841 bits (424), Expect = 0.0
Identities = 438/445 (98%)
Strand = Plus / Plus
Query: 83 aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 69
Query: 143 aatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagaga 202
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagaga 129
Query: 203 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 189
Query: 263 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 249
Query: 323 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 309
Query: 383 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 369
Query: 443 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 429
Query: 503 cttggttctcgcatcgatgaagaac 527
|||||||||||||||||||||||||
Sbjct: 430 cttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-94.f
(794 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 503 tcttggttctcgcatcgatgaagaacg 529
|||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaacg 456
Score = 337 bits (170), Expect = 8e-89
Identities = 219/235 (93%), Gaps = 2/235 (0%)
Strand = Plus / Plus
Query: 530 gtaacaaggtttccgtaggtgaccctgcggaaggatcattaaagaaatttaataattttg 589
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 9 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 68
Query: 590 aaaatggannnnnnngttttggcaagatcatgagagcttttactggggcaagaagacaag 649
|||||||| |||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 69 aaaatggatttttttgttttggcaagagcatgagagcttttactggg-caagaagacaag 127
Query: 650 agatggacagtccagccgggcctgcgcttaagtgcgcggtcttgctagtcttgtaagttt 709
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 128 agatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagttt 187
Query: 710 ctttcttgcta-tccaaaaggtgacagatttctgtgctttagttataggacaatt 763
||||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct: 188 ctttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaatt 242
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 503 tcttggttctcgcatcgatgaagaacg 529
|||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaacg 455
Score = 337 bits (170), Expect = 8e-89
Identities = 219/235 (93%), Gaps = 2/235 (0%)
Strand = Plus / Plus
Query: 530 gtaacaaggtttccgtaggtgaccctgcggaaggatcattaaagaaatttaataattttg 589
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 8 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 67
Query: 590 aaaatggannnnnnngttttggcaagatcatgagagcttttactggggcaagaagacaag 649
|||||||| |||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 68 aaaatggatttttttgttttggcaagagcatgagagcttttactggg-caagaagacaag 126
Query: 650 agatggacagtccagccgggcctgcgcttaagtgcgcggtcttgctagtcttgtaagttt 709
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 127 agatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagttt 186
Query: 710 ctttcttgcta-tccaaaaggtgacagatttctgtgctttagttataggacaatt 763
||||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct: 187 ctttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaatt 241
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 503 tcttggttctcgcatcgatgaagaacg 529
|||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaacg 454
Score = 337 bits (170), Expect = 8e-89
Identities = 219/235 (93%), Gaps = 2/235 (0%)
Strand = Plus / Plus
Query: 530 gtaacaaggtttccgtaggtgaccctgcggaaggatcattaaagaaatttaataattttg 589
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 7 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 66
Query: 590 aaaatggannnnnnngttttggcaagatcatgagagcttttactggggcaagaagacaag 649
|||||||| |||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 67 aaaatggatttttttgttttggcaagagcatgagagcttttactggg-caagaagacaag 125
Query: 650 agatggacagtccagccgggcctgcgcttaagtgcgcggtcttgctagtcttgtaagttt 709
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 126 agatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagttt 185
Query: 710 ctttcttgcta-tccaaaaggtgacagatttctgtgctttagttataggacaatt 763
||||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct: 186 ctttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaatt 240
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 503 tcttggttctcgcatcgatgaagaacg 529
|||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaacg 452
Score = 337 bits (170), Expect = 8e-89
Identities = 219/235 (93%), Gaps = 2/235 (0%)
Strand = Plus / Plus
Query: 530 gtaacaaggtttccgtaggtgaccctgcggaaggatcattaaagaaatttaataattttg 589
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 64
Query: 590 aaaatggannnnnnngttttggcaagatcatgagagcttttactggggcaagaagacaag 649
|||||||| |||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 65 aaaatggatttttttgttttggcaagagcatgagagcttttactggg-caagaagacaag 123
Query: 650 agatggacagtccagccgggcctgcgcttaagtgcgcggtcttgctagtcttgtaagttt 709
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 124 agatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagttt 183
Query: 710 ctttcttgcta-tccaaaaggtgacagatttctgtgctttagttataggacaatt 763
||||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct: 184 ctttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaatt 238
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 503 tcttggttctcgcatcgatgaagaacg 529
|||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaacg 455
Score = 337 bits (170), Expect = 8e-89
Identities = 219/235 (93%), Gaps = 2/235 (0%)
Strand = Plus / Plus
Query: 530 gtaacaaggtttccgtaggtgaccctgcggaaggatcattaaagaaatttaataattttg 589
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 8 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 67
Query: 590 aaaatggannnnnnngttttggcaagatcatgagagcttttactggggcaagaagacaag 649
|||||||| |||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 68 aaaatggatttttttgttttggcaagagcatgagagcttttactggg-caagaagacaag 126
Query: 650 agatggacagtccagccgggcctgcgcttaagtgcgcggtcttgctagtcttgtaagttt 709
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 127 agatggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagttt 186
Query: 710 ctttcttgcta-tccaaaaggtgacagatttctgtgctttagttataggacaatt 763
||||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct: 187 ctttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaatt 241
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-95.f
(980 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 842 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 842 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 842 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 842 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 842 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 83 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 143 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 202
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 203 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 263 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 323 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 383 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 443 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 503 tcttggttctcgcatcgatgaagaac 528
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-96.f
(938 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 89 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 149 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 209 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 269 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 329 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 389 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 449 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 508
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 509 gcaggttcacctacggaaaccttgtta 535
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 89 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 149 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 209 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 269 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 329 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 389 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 449 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 508
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 509 gcaggttcacctacggaaaccttgtta 535
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 89 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 149 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 209 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 269 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 329 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 389 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 449 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 508
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 509 gcaggttcacctacggaaaccttgtta 535
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 89 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 149 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 209 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 269 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 329 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 389 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 449 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 508
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 509 gcaggttcacctacggaaaccttgtta 535
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 89 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 149 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 209 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 269 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 329 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 389 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 449 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 508
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 509 gcaggttcacctacggaaaccttgtta 535
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
Database: /PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
Posted date: Apr 5, 2012 2:42 AM
Number of letters in database: 40,680,653,861
Number of sequences in database: 15,920,729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 15920729
Number of Hits to DB: 8,309,103,704
Number of extensions: 2031812503
Number of successful extensions: 747266628
Number of sequences better than 10.0: 11573729
Number of HSP's gapped: 702445775
Number of HSP's successfully gapped: 511604155
Length of database: 40,680,653,861
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 13 (26.3 bits)
S2: 21 (42.1 bits)