BLASTN 2.2.20 [Feb-08-2009]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-86.f
         (635 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1098   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1098   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1098   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1098   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1098   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1098 bits (554), Expect = 0.0
 Identities = 554/554 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                         
Query: 621 cgtaaagggcgtgt 634
           ||||||||||||||
Sbjct: 548 cgtaaagggcgtgt 561
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1098 bits (554), Expect = 0.0
 Identities = 554/554 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                         
Query: 621 cgtaaagggcgtgt 634
           ||||||||||||||
Sbjct: 548 cgtaaagggcgtgt 561
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1098 bits (554), Expect = 0.0
 Identities = 554/554 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                         
Query: 621 cgtaaagggcgtgt 634
           ||||||||||||||
Sbjct: 548 cgtaaagggcgtgt 561
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1098 bits (554), Expect = 0.0
 Identities = 554/554 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                         
Query: 621 cgtaaagggcgtgt 634
           ||||||||||||||
Sbjct: 548 cgtaaagggcgtgt 561
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1098 bits (554), Expect = 0.0
 Identities = 554/554 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                         
Query: 621 cgtaaagggcgtgt 634
           ||||||||||||||
Sbjct: 548 cgtaaagggcgtgt 561
BLAST Search Results