BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-01.f
(645 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1114 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1114 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1114 0.0
EF095713_1|Thermus thermophilus|16S ribosomal RNA 1114 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1114 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 620 tagctgatgggacgcgggcccatccg 645
||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccg 310
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 620 tagctgatgggacgcgggcccatccg 645
||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccg 213
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 620 tagctgatgggacgcgggcccatccg 645
||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccg 220
>EF095713_1|Thermus thermophilus|16S ribosomal RNA
Length = 1381
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 607
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 547
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 487
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 427
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 367
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 307
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 247
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 187
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 127
Query: 620 tagctgatgggacgcgggcccatccg 645
||||||||||||||||||||||||||
Sbjct: 126 tagctgatgggacgcgggcccatccg 101
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 620 tagctgatgggacgcgggcccatccg 645
||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccg 213
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-02.f
(649 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1128 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1128 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1128 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1128 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1128 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcg 670
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcg 573
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcg 580
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcg 573
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcg 581
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-03.f
(639 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1100 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1100 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1100 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1100 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1100 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1100 bits (555), Expect = 0.0
Identities = 555/555 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 621 cgtaaagggcgtgta 635
|||||||||||||||
Sbjct: 642 cgtaaagggcgtgta 656
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1100 bits (555), Expect = 0.0
Identities = 555/555 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 621 cgtaaagggcgtgta 635
|||||||||||||||
Sbjct: 545 cgtaaagggcgtgta 559
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1100 bits (555), Expect = 0.0
Identities = 555/555 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 621 cgtaaagggcgtgta 635
|||||||||||||||
Sbjct: 552 cgtaaagggcgtgta 566
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1100 bits (555), Expect = 0.0
Identities = 555/555 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 621 cgtaaagggcgtgta 635
|||||||||||||||
Sbjct: 545 cgtaaagggcgtgta 559
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1100 bits (555), Expect = 0.0
Identities = 555/555 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 621 cgtaaagggcgtgta 635
|||||||||||||||
Sbjct: 553 cgtaaagggcgtgta 567
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-04.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1116 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1116 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1116 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1116 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1116 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcct 664
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcct 567
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcct 574
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcct 567
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcct 575
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-05.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1128 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1128 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1128 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1128 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1128 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcg 670
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcg 573
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcg 580
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcg 573
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcg 581
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-06.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1112 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1112 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1112 0.0
EF095713_1|Thermus thermophilus|16S ribosomal RNA 1112 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1112 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1112 bits (561), Expect = 0.0
Identities = 567/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 260 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaa 307
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1112 bits (561), Expect = 0.0
Identities = 567/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 260 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaa 210
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1112 bits (561), Expect = 0.0
Identities = 567/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 260 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaa 217
>EF095713_1|Thermus thermophilus|16S ribosomal RNA
Length = 1381
Score = 1112 bits (561), Expect = 0.0
Identities = 567/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 607
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 547
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 487
Query: 260 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 427
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 367
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 307
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 247
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 187
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 127
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 126 tagctgatgggacgcgggcccatccggaa 98
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1112 bits (561), Expect = 0.0
Identities = 567/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 260 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaa 210
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-07.f
(631 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.038
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 485 tttaatgatccttccgcaggttcacc 510
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-08.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.040
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 485 tttaatgatccttccgcaggttcacc 510
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.040
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-09.f
(643 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.039
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 94 ggtgaacctgcggaaggatcattaaa 119
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 78 taacaaggtttccgtaggtgaacctgcggaaggatca 114
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 78 taacaaggtttccgtaggtgaacctgcggaaggatca 114
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 78 taacaaggtttccgtaggtgaacctgcggaaggatca 114
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.039
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 78 taacaaggtttccgtaggtgaacctgcggaaggatca 114
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-10.f
(637 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.039
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 485 tttaatgatccttccgcaggttcacc 510
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.039
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-11.f
(632 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.038
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 486 tttaatgatccttccgcaggttcacc 511
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 491 tgatccttccgcaggttcacctacggaaaccttgtta 527
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 491 tgatccttccgcaggttcacctacggaaaccttgtta 527
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 491 tgatccttccgcaggttcacctacggaaaccttgtta 527
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 491 tgatccttccgcaggttcacctacggaaaccttgtta 527
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-12.f
(619 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 52 4e-05
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 52 4e-05
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 52 4e-05
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 44 0.010
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgttac 529
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgttac 1429
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgttac 529
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgttac 1433
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgttac 529
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgttac 1431
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 487 tttaatgatccttccgcaggttcacc 512
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgttac 529
|||||| ||||||||||| ||||||| ||||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgttac 1418
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-13.f
(644 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1112 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1112 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1112 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1112 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1112 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1112 bits (561), Expect = 0.0
Identities = 561/561 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 622 cgtaaagggcgtgtaggcggc 642
|||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggc 662
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1112 bits (561), Expect = 0.0
Identities = 561/561 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 622 cgtaaagggcgtgtaggcggc 642
|||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggc 565
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1112 bits (561), Expect = 0.0
Identities = 561/561 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 622 cgtaaagggcgtgtaggcggc 642
|||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggc 572
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1112 bits (561), Expect = 0.0
Identities = 561/561 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 622 cgtaaagggcgtgtaggcggc 642
|||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggc 565
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1112 bits (561), Expect = 0.0
Identities = 561/561 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 622 cgtaaagggcgtgtaggcggc 642
|||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggc 573
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-14.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1126 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1126 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1126 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1126 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1126 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1126 bits (568), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggc 669
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1126 bits (568), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggc 572
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1126 bits (568), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggc 579
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1126 bits (568), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggc 572
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1126 bits (568), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggc 580
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-15.f
(643 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1102 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1102 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1102 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1102 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1102 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1102 bits (556), Expect = 0.0
Identities = 559/560 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 382 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 622 cgtaaagggcgtgtaggcgg 641
||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcgg 661
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1102 bits (556), Expect = 0.0
Identities = 559/560 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 382 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 622 cgtaaagggcgtgtaggcgg 641
||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcgg 564
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1102 bits (556), Expect = 0.0
Identities = 559/560 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 382 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 622 cgtaaagggcgtgtaggcgg 641
||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcgg 571
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1102 bits (556), Expect = 0.0
Identities = 559/560 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 382 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 622 cgtaaagggcgtgtaggcgg 641
||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcgg 564
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1102 bits (556), Expect = 0.0
Identities = 559/560 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 382 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 622 cgtaaagggcgtgtaggcgg 641
||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcgg 572
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-16.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1128 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1128 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1128 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1128 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1128 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcg 670
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcg 573
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcg 580
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcg 573
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcg 581
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-17.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1102 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1102 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1102 0.0
EF095713_1|Thermus thermophilus|16S ribosomal RNA 1102 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1102 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1102 bits (556), Expect = 0.0
Identities = 565/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 621 tagctgatggggcgcgggcccatccgga 648
||||||||||| ||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccgga 308
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1102 bits (556), Expect = 0.0
Identities = 565/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 621 tagctgatggggcgcgggcccatccgga 648
||||||||||| ||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccgga 211
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1102 bits (556), Expect = 0.0
Identities = 565/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 621 tagctgatggggcgcgggcccatccgga 648
||||||||||| ||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccgga 218
>EF095713_1|Thermus thermophilus|16S ribosomal RNA
Length = 1381
Score = 1102 bits (556), Expect = 0.0
Identities = 565/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 607
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 547
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 487
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 427
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 367
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 307
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 247
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 187
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 186 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 127
Query: 621 tagctgatggggcgcgggcccatccgga 648
||||||||||| ||||||||||||||||
Sbjct: 126 tagctgatgggacgcgggcccatccgga 99
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1102 bits (556), Expect = 0.0
Identities = 565/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 621 tagctgatggggcgcgggcccatccgga 648
||||||||||| ||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccgga 211
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-18.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1106 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1106 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1106 0.0
EF095713_1|Thermus thermophilus|16S ribosomal RNA 1106 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1106 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1106 bits (558), Expect = 0.0
Identities = 567/570 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 319 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 378
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 499 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 619 tagctgatgggacgcgggcccatccggaag 648
||||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaag 306
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1106 bits (558), Expect = 0.0
Identities = 567/570 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 319 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 378
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 499 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 619 tagctgatgggacgcgggcccatccggaag 648
||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaag 209
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1106 bits (558), Expect = 0.0
Identities = 567/570 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 319 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 378
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 499 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 619 tagctgatgggacgcgggcccatccggaag 648
||||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaag 216
>EF095713_1|Thermus thermophilus|16S ribosomal RNA
Length = 1381
Score = 1106 bits (558), Expect = 0.0
Identities = 567/570 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 607
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 547
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 487
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 427
Query: 319 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 378
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 367
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 307
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 247
Query: 499 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 187
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 127
Query: 619 tagctgatgggacgcgggcccatccggaag 648
||||||||||||||||||||||||||||||
Sbjct: 126 tagctgatgggacgcgggcccatccggaag 97
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1106 bits (558), Expect = 0.0
Identities = 567/570 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 319 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 378
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 499 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 619 tagctgatgggacgcgggcccatccggaag 648
||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaag 209
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-19.f
(649 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.039
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 96 ggtgaacctgcggaaggatcattaaa 121
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatca 116
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatca 116
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatca 116
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.039
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatca 116
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-20.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.040
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 97 ggtgaacctgcggaaggatcattaaa 122
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatca 117
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatca 117
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatca 117
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.040
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatca 117
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-21.f
(647 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.039
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 485 tttaatgatccttccgcaggttcacc 510
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.039
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-22.f
(639 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.039
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 95 ggtgaacctgcggaaggatcattaaa 120
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatca 115
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatca 115
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatca 115
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.039
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatca 115
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-23.f
(634 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 52 4e-05
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 52 4e-05
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 52 4e-05
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 44 0.010
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgttac 529
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgttac 1429
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgttac 529
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgttac 1433
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgttac 529
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgttac 1431
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 487 tttaatgatccttccgcaggttcacc 512
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggaaaccttgttac 529
|||||| ||||||||||| ||||||| ||||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgttac 1418
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-24.f
(623 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.038
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 484 tttaatgatccttccgcaggttcacc 509
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 489 tgatccttccgcaggttcacctacggaaaccttgtta 525
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 489 tgatccttccgcaggttcacctacggaaaccttgtta 525
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 489 tgatccttccgcaggttcacctacggaaaccttgtta 525
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 489 tgatccttccgcaggttcacctacggaaaccttgtta 525
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-25.f
(630 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1082 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1082 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1082 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1082 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1082 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1082 bits (546), Expect = 0.0
Identities = 546/546 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 620 cgtaaa 625
||||||
Sbjct: 642 cgtaaa 647
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1082 bits (546), Expect = 0.0
Identities = 546/546 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 620 cgtaaa 625
||||||
Sbjct: 545 cgtaaa 550
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1082 bits (546), Expect = 0.0
Identities = 546/546 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 620 cgtaaa 625
||||||
Sbjct: 552 cgtaaa 557
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1082 bits (546), Expect = 0.0
Identities = 546/546 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 620 cgtaaa 625
||||||
Sbjct: 545 cgtaaa 550
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1082 bits (546), Expect = 0.0
Identities = 546/546 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 620 cgtaaa 625
||||||
Sbjct: 553 cgtaaa 558
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-26.f
(649 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1126 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1126 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1126 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1126 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1126 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1126 bits (568), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 620 cgtaaagggcgtgtaggcggcctggggc 647
||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggc 669
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1126 bits (568), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 620 cgtaaagggcgtgtaggcggcctggggc 647
||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggc 572
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1126 bits (568), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 620 cgtaaagggcgtgtaggcggcctggggc 647
||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggc 579
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1126 bits (568), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 620 cgtaaagggcgtgtaggcggcctggggc 647
||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggc 572
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1126 bits (568), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 620 cgtaaagggcgtgtaggcggcctggggc 647
||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggc 580
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-27.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1124 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1124 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1124 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1124 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1124 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1124 bits (567), Expect = 0.0
Identities = 567/567 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 622 cgtaaagggcgtgtaggcggcctgggg 648
|||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctgggg 668
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1124 bits (567), Expect = 0.0
Identities = 567/567 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 622 cgtaaagggcgtgtaggcggcctgggg 648
|||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctgggg 571
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1124 bits (567), Expect = 0.0
Identities = 567/567 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 622 cgtaaagggcgtgtaggcggcctgggg 648
|||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctgggg 578
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1124 bits (567), Expect = 0.0
Identities = 567/567 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 622 cgtaaagggcgtgtaggcggcctgggg 648
|||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctgggg 571
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1124 bits (567), Expect = 0.0
Identities = 567/567 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 622 cgtaaagggcgtgtaggcggcctgggg 648
|||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctgggg 579
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-28.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1116 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1116 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1116 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1116 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1116 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcct 664
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcct 567
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcct 574
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcct 567
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcct 575
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-29.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1122 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1122 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1122 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1122 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1122 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1122 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggg 667
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1122 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggg 570
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1122 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggg 577
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1122 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggg 570
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1122 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggg 578
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-30.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 729 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 729 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 729 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 729 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 729 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 80 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 410
Query: 140 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 350
Query: 200 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 290
Query: 260 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 230
Query: 320 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 170
Query: 380 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 110
Query: 440 ggatcaaa 447
||||||||
Sbjct: 109 ggatcaaa 102
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 80 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 313
Query: 140 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 253
Query: 200 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 193
Query: 260 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 133
Query: 320 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 73
Query: 380 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 13
Query: 440 ggatcaaa 447
||||||||
Sbjct: 12 ggatcaaa 5
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 80 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 320
Query: 140 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 260
Query: 200 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 200
Query: 260 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 140
Query: 320 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 80
Query: 380 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 20
Query: 440 ggatcaaa 447
||||||||
Sbjct: 19 ggatcaaa 12
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 80 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 313
Query: 140 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 253
Query: 200 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 193
Query: 260 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 133
Query: 320 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 73
Query: 380 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 13
Query: 440 ggatcaaa 447
||||||||
Sbjct: 12 ggatcaaa 5
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 80 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 321
Query: 140 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 261
Query: 200 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 201
Query: 260 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 141
Query: 320 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 81
Query: 380 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 21
Query: 440 ggatcaaa 447
||||||||
Sbjct: 20 ggatcaaa 13
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-31.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 52 4e-05
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 52 4e-05
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 52 4e-05
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 44 0.010
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 488 tgatccttccgcaggttcacctacggaaaccttgttac 525
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgttac 1429
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 488 tgatccttccgcaggttcacctacggaaaccttgttac 525
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgttac 1433
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 488 tgatccttccgcaggttcacctacggaaaccttgttac 525
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgttac 1431
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 483 tttaatgatccttccgcaggttcacc 508
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 488 tgatccttccgcaggttcacctacggaaaccttgttac 525
|||||| ||||||||||| ||||||| ||||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgttac 1418
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-32.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.040
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 485 tttaatgatccttccgcaggttcacc 510
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.040
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-33.f
(648 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 52 4e-05
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 52 4e-05
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 52 4e-05
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 44 0.010
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 527 gtaacaaggtttccgtaggtgaacctgcggaaggatca 564
|||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1429 gtaacaaggtatccgtaggggaacctgcggatggatca 1466
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatca 116
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 527 gtaacaaggtttccgtaggtgaacctgcggaaggatca 564
|||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1433 gtaacaaggtatccgtaggggaacctgcggatggatca 1470
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatca 116
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 527 gtaacaaggtttccgtaggtgaacctgcggaaggatca 564
|||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1431 gtaacaaggtatccgtaggggaacctgcggatggatca 1468
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatca 116
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 96 ggtgaacctgcggaaggatcattaaa 121
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 544 ggtgaacctgcggaaggatcattaaa 569
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 527 gtaacaaggtttccgtaggtgaacctgcggaaggatca 564
|||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1418 gtaacaaggtagccgtaggggaacctgcggatggatca 1455
Score = 42.1 bits (21), Expect = 0.039
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatca 116
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-34.f
(640 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.039
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 95 ggtgaacctgcggaaggatcattaaa 120
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatca 115
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatca 115
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatca 115
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.039
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatca 115
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-35.f
(636 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.039
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 483 tttaatgatccttccgcaggttcacc 508
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 488 tgatccttccgcaggttcacctacggaaaccttgtta 524
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 488 tgatccttccgcaggttcacctacggaaaccttgtta 524
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 488 tgatccttccgcaggttcacctacggaaaccttgtta 524
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.039
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 488 tgatccttccgcaggttcacctacggaaaccttgtta 524
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-36.f
(622 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.038
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 95 ggtgaacctgcggaaggatcattaaa 120
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatca 115
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatca 115
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatca 115
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatca 115
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-37.f
(642 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1102 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1102 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1102 0.0
EF095713_1|Thermus thermophilus|16S ribosomal RNA 1102 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1102 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1102 bits (556), Expect = 0.0
Identities = 559/560 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 621 tagctgatgggacgcgggcc 640
||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcc 316
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1102 bits (556), Expect = 0.0
Identities = 559/560 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 621 tagctgatgggacgcgggcc 640
||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcc 219
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1102 bits (556), Expect = 0.0
Identities = 559/560 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 621 tagctgatgggacgcgggcc 640
||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcc 226
>EF095713_1|Thermus thermophilus|16S ribosomal RNA
Length = 1381
Score = 1102 bits (556), Expect = 0.0
Identities = 559/560 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 607
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 547
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 487
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 427
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 367
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 307
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 247
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 187
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 127
Query: 621 tagctgatgggacgcgggcc 640
||||||||||||||||||||
Sbjct: 126 tagctgatgggacgcgggcc 107
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1102 bits (556), Expect = 0.0
Identities = 559/560 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 621 tagctgatgggacgcgggcc 640
||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcc 219
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-38.f
(649 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
EF095713_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1118 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 619 tagctgatgggacgcgggcccatccgga 646
||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccgga 308
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 619 tagctgatgggacgcgggcccatccgga 646
||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccgga 211
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 619 tagctgatgggacgcgggcccatccgga 646
||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccgga 218
>EF095713_1|Thermus thermophilus|16S ribosomal RNA
Length = 1381
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 607
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 547
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 487
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 427
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 367
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 307
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 247
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 187
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 127
Query: 619 tagctgatgggacgcgggcccatccgga 646
||||||||||||||||||||||||||||
Sbjct: 126 tagctgatgggacgcgggcccatccgga 99
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 619 tagctgatgggacgcgggcccatccgga 646
||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccgga 211
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-39.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1130 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1130 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1130 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1130 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1130 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgt 671
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgt 574
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgt 581
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgt 574
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgt 582
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-40.f
(649 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
EF095713_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1118 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccgga 308
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccgga 211
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccgga 218
>EF095713_1|Thermus thermophilus|16S ribosomal RNA
Length = 1381
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 607
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 547
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 487
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 427
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 367
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 307
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 247
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 187
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 127
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 126 tagctgatgggacgcgggcccatccgga 99
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccgga 211
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-41.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
EF095713_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1118 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccgga 308
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccgga 211
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccgga 218
>EF095713_1|Thermus thermophilus|16S ribosomal RNA
Length = 1381
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 607
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 547
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 487
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 427
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 367
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 307
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 247
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 187
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 127
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 126 tagctgatgggacgcgggcccatccgga 99
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccgga 211
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-42.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1130 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1130 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1130 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1130 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1130 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgt 671
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgt 574
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgt 581
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgt 574
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgt 582
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-43.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 52 4e-05
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 52 4e-05
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 52 4e-05
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 44 0.010
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgttac 527
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgttac 1429
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgttac 527
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgttac 1433
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgttac 527
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgttac 1431
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 485 tttaatgatccttccgcaggttcacc 510
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgttac 527
|||||| ||||||||||| ||||||| ||||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgttac 1418
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-44.f
(649 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.039
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 484 tttaatgatccttccgcaggttcacc 509
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 489 tgatccttccgcaggttcacctacggaaaccttgtta 525
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 489 tgatccttccgcaggttcacctacggaaaccttgtta 525
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 489 tgatccttccgcaggttcacctacggaaaccttgtta 525
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.039
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 489 tgatccttccgcaggttcacctacggaaaccttgtta 525
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-45.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 52 4e-05
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 52 4e-05
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 52 4e-05
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 44 0.010
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 481 tgatccttccgcaggttcacctacggaaaccttgttac 518
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgttac 1429
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 481 tgatccttccgcaggttcacctacggaaaccttgttac 518
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgttac 1433
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 481 tgatccttccgcaggttcacctacggaaaccttgttac 518
|||||| ||||||||||| |||||||| ||||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgttac 1431
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 476 tttaatgatccttccgcaggttcacc 501
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 481 tgatccttccgcaggttcacctacggaaaccttgttac 518
|||||| ||||||||||| ||||||| ||||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgttac 1418
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-46.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.040
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 484 tttaatgatccttccgcaggttcacc 509
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 489 tgatccttccgcaggttcacctacggaaaccttgtta 525
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 489 tgatccttccgcaggttcacctacggaaaccttgtta 525
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 489 tgatccttccgcaggttcacctacggaaaccttgtta 525
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.040
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 489 tgatccttccgcaggttcacctacggaaaccttgtta 525
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-47.f
(632 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 52 4e-05
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 52 4e-05
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 52 4e-05
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 44 0.010
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 528 gtaacaaggtttccgtaggtgaacctgcggaaggatca 565
|||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1429 gtaacaaggtatccgtaggggaacctgcggatggatca 1466
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatca 117
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 528 gtaacaaggtttccgtaggtgaacctgcggaaggatca 565
|||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1433 gtaacaaggtatccgtaggggaacctgcggatggatca 1470
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatca 117
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 528 gtaacaaggtttccgtaggtgaacctgcggaaggatca 565
|||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1431 gtaacaaggtatccgtaggggaacctgcggatggatca 1468
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatca 117
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 97 ggtgaacctgcggaaggatcattaaa 122
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 545 ggtgaacctgcggaaggatcattaaa 570
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 528 gtaacaaggtttccgtaggtgaacctgcggaaggatca 565
|||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1418 gtaacaaggtagccgtaggggaacctgcggatggatca 1455
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatca 117
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-48.f
(622 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.038
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 483 tttaatgatccttccgcaggttcacc 508
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 488 tgatccttccgcaggttcacctacggaaaccttgtta 524
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 488 tgatccttccgcaggttcacctacggaaaccttgtta 524
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 488 tgatccttccgcaggttcacctacggaaaccttgtta 524
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 488 tgatccttccgcaggttcacctacggaaaccttgtta 524
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-49.f
(633 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1090 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1090 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1090 0.0
EF095713_1|Thermus thermophilus|16S ribosomal RNA 1090 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1090 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1090 bits (550), Expect = 0.0
Identities = 553/554 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 619 tagctgatgggacg 632
||||||||||||||
Sbjct: 335 tagctgatgggacg 322
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1090 bits (550), Expect = 0.0
Identities = 553/554 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 619 tagctgatgggacg 632
||||||||||||||
Sbjct: 238 tagctgatgggacg 225
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1090 bits (550), Expect = 0.0
Identities = 553/554 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 619 tagctgatgggacg 632
||||||||||||||
Sbjct: 245 tagctgatgggacg 232
>EF095713_1|Thermus thermophilus|16S ribosomal RNA
Length = 1381
Score = 1090 bits (550), Expect = 0.0
Identities = 553/554 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 607
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 547
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 487
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 427
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 367
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 307
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 247
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 187
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 127
Query: 619 tagctgatgggacg 632
||||||||||||||
Sbjct: 126 tagctgatgggacg 113
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1090 bits (550), Expect = 0.0
Identities = 553/554 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 619 tagctgatgggacg 632
||||||||||||||
Sbjct: 238 tagctgatgggacg 225
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-50.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1011 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1011 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1011 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1011 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1011 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1011 bits (510), Expect = 0.0
Identities = 546/558 (97%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 380 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 440 ggcgcaagcctgactgagcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 499
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 500 tgaacccgggacgaaaccccccacgaggggactgacggtacctgggtaataccgcctgcc 559
||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 560 aactccttgccagcaaccgcggtaataccgacggcgcgagcgttacccggattcactggg 619
|||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 620 cgtaaagggcgtgtaggc 637
||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggc 659
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1011 bits (510), Expect = 0.0
Identities = 546/558 (97%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 380 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 440 ggcgcaagcctgactgagcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 499
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 500 tgaacccgggacgaaaccccccacgaggggactgacggtacctgggtaataccgcctgcc 559
||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 560 aactccttgccagcaaccgcggtaataccgacggcgcgagcgttacccggattcactggg 619
|||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 620 cgtaaagggcgtgtaggc 637
||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggc 562
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1011 bits (510), Expect = 0.0
Identities = 546/558 (97%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 380 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 440 ggcgcaagcctgactgagcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 499
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 500 tgaacccgggacgaaaccccccacgaggggactgacggtacctgggtaataccgcctgcc 559
||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 560 aactccttgccagcaaccgcggtaataccgacggcgcgagcgttacccggattcactggg 619
|||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 620 cgtaaagggcgtgtaggc 637
||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggc 569
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1011 bits (510), Expect = 0.0
Identities = 546/558 (97%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 380 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 440 ggcgcaagcctgactgagcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 499
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 500 tgaacccgggacgaaaccccccacgaggggactgacggtacctgggtaataccgcctgcc 559
||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 560 aactccttgccagcaaccgcggtaataccgacggcgcgagcgttacccggattcactggg 619
|||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 620 cgtaaagggcgtgtaggc 637
||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggc 562
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1011 bits (510), Expect = 0.0
Identities = 546/558 (97%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 380 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 440 ggcgcaagcctgactgagcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 499
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 500 tgaacccgggacgaaaccccccacgaggggactgacggtacctgggtaataccgcctgcc 559
||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 560 aactccttgccagcaaccgcggtaataccgacggcgcgagcgttacccggattcactggg 619
|||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 620 cgtaaagggcgtgtaggc 637
||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggc 570
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-51.f
(649 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1122 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1122 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1122 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1122 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1122 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1122 bits (566), Expect = 0.0
Identities = 569/570 (99%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgt 671
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1122 bits (566), Expect = 0.0
Identities = 569/570 (99%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgt 574
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1122 bits (566), Expect = 0.0
Identities = 569/570 (99%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgt 581
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1122 bits (566), Expect = 0.0
Identities = 569/570 (99%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgt 574
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1122 bits (566), Expect = 0.0
Identities = 569/570 (99%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgt 582
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-52.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1130 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1130 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1130 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1130 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1130 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgt 671
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgt 574
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgt 581
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgt 574
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgt 582
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-53.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1122 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1122 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1122 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1122 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1122 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1122 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggg 667
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1122 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggg 570
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1122 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggg 577
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1122 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggg 570
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1122 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggg 578
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-54.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
EF095713_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1118 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccgga 308
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccgga 211
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccgga 218
>EF095713_1|Thermus thermophilus|16S ribosomal RNA
Length = 1381
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 607
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 547
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 487
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 427
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 367
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 307
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 247
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 187
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 127
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 126 tagctgatgggacgcgggcccatccgga 99
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccgga 211
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-55.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.040
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 98 ggtgaacctgcggaaggatcattaaa 123
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatca 118
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatca 118
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatca 118
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.040
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatca 118
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-56.f
(649 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.039
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 96 ggtgaacctgcggaaggatcattaaa 121
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatca 116
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatca 116
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatca 116
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.039
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatca 116
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-57.f
(645 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.039
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 93 ggtgaacctgcggaaggatcattaaa 118
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 77 taacaaggtttccgtaggtgaacctgcggaaggatca 113
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 77 taacaaggtttccgtaggtgaacctgcggaaggatca 113
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 77 taacaaggtttccgtaggtgaacctgcggaaggatca 113
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.039
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 77 taacaaggtttccgtaggtgaacctgcggaaggatca 113
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-58.f
(649 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.039
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 482 tttaatgatccttccgcaggttcacc 507
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 487 tgatccttccgcaggttcacctacggaaaccttgtta 523
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 487 tgatccttccgcaggttcacctacggaaaccttgtta 523
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 487 tgatccttccgcaggttcacctacggaaaccttgtta 523
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.039
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 487 tgatccttccgcaggttcacctacggaaaccttgtta 523
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-59.f
(641 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.039
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 485 tttaatgatccttccgcaggttcacc 510
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.039
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-60.f
(627 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.038
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 484 tttaatgatccttccgcaggttcacc 509
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 489 tgatccttccgcaggttcacctacggaaaccttgtta 525
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 489 tgatccttccgcaggttcacctacggaaaccttgtta 525
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 489 tgatccttccgcaggttcacctacggaaaccttgtta 525
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 489 tgatccttccgcaggttcacctacggaaaccttgtta 525
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-61.f
(642 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1092 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1092 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1092 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1092 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1092 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1092 bits (551), Expect = 0.0
Identities = 554/555 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcgagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 626 cgtaaagggcgtgta 640
|||||||||||||||
Sbjct: 642 cgtaaagggcgtgta 656
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1092 bits (551), Expect = 0.0
Identities = 554/555 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcgagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 626 cgtaaagggcgtgta 640
|||||||||||||||
Sbjct: 545 cgtaaagggcgtgta 559
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1092 bits (551), Expect = 0.0
Identities = 554/555 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcgagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 626 cgtaaagggcgtgta 640
|||||||||||||||
Sbjct: 552 cgtaaagggcgtgta 566
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1092 bits (551), Expect = 0.0
Identities = 554/555 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcgagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 626 cgtaaagggcgtgta 640
|||||||||||||||
Sbjct: 545 cgtaaagggcgtgta 559
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1092 bits (551), Expect = 0.0
Identities = 554/555 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcgagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 626 cgtaaagggcgtgta 640
|||||||||||||||
Sbjct: 553 cgtaaagggcgtgta 567
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-62.f
(646 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1114 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1114 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1114 0.0
EF095713_1|Thermus thermophilus|16S ribosomal RNA 1114 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1114 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 619 tagctgatgggacgcgggcccatccg 644
||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccg 310
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 619 tagctgatgggacgcgggcccatccg 644
||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccg 213
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 619 tagctgatgggacgcgggcccatccg 644
||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccg 220
>EF095713_1|Thermus thermophilus|16S ribosomal RNA
Length = 1381
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 607
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 547
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 487
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 427
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 367
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 307
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 247
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 187
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 127
Query: 619 tagctgatgggacgcgggcccatccg 644
||||||||||||||||||||||||||
Sbjct: 126 tagctgatgggacgcgggcccatccg 101
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 619 tagctgatgggacgcgggcccatccg 644
||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccg 213
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-63.f
(649 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
EF095713_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1118 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 619 tagctgatgggacgcgggcccatccgga 646
||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccgga 308
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 619 tagctgatgggacgcgggcccatccgga 646
||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccgga 211
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 619 tagctgatgggacgcgggcccatccgga 646
||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccgga 218
>EF095713_1|Thermus thermophilus|16S ribosomal RNA
Length = 1381
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 607
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 547
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 487
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 427
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 367
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 307
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 247
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 187
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 127
Query: 619 tagctgatgggacgcgggcccatccgga 646
||||||||||||||||||||||||||||
Sbjct: 126 tagctgatgggacgcgggcccatccgga 99
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 619 tagctgatgggacgcgggcccatccgga 646
||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccgga 211
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-64.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
EF095713_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1118 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccgga 308
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccgga 211
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccgga 218
>EF095713_1|Thermus thermophilus|16S ribosomal RNA
Length = 1381
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 607
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 547
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 487
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 427
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 367
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 307
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 247
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 187
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 127
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 126 tagctgatgggacgcgggcccatccgga 99
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccgga 211
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-65.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1116 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1116 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1116 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1116 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1116 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcct 664
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcct 567
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcct 574
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcct 567
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcct 575
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-66.f
(649 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1120 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1120 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1120 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1120 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1120 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 619 cgtaaagggcgtgtaggcggcctggggcg 647
|||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcg 670
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 619 cgtaaagggcgtgtaggcggcctggggcg 647
|||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcg 573
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 619 cgtaaagggcgtgtaggcggcctggggcg 647
|||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcg 580
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 619 cgtaaagggcgtgtaggcggcctggggcg 647
|||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcg 573
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 619 cgtaaagggcgtgtaggcggcctggggcg 647
|||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcg 581
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-67.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.040
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 483 tttaatgatccttccgcaggttcacc 508
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 488 tgatccttccgcaggttcacctacggaaaccttgtta 524
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 488 tgatccttccgcaggttcacctacggaaaccttgtta 524
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 488 tgatccttccgcaggttcacctacggaaaccttgtta 524
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.040
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 488 tgatccttccgcaggttcacctacggaaaccttgtta 524
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-68.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.040
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 97 ggtgaacctgcggaaggatcattaaa 122
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 81 taacaaggtctccgtaggtgaacctgcggaaggatca 117
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 81 taacaaggtctccgtaggtgaacctgcggaaggatca 117
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 81 taacaaggtctccgtaggtgaacctgcggaaggatca 117
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.040
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 81 taacaaggtctccgtaggtgaacctgcggaaggatca 117
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-69.f
(648 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.039
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 96 ggtgaacctgcggaaggatcattaaa 121
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatca 116
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatca 116
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatca 116
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.039
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatca 116
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-70.f
(649 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.039
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 97 ggtgaacctgcggaaggatcattaaa 122
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatca 117
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatca 117
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatca 117
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.039
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatca 117
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-71.f
(637 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.039
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 486 tttaatgatccttccgcaggttcacc 511
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 491 tgatccttccgcaggttcacctacggagaccttgtta 527
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 491 tgatccttccgcaggttcacctacggagaccttgtta 527
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 491 tgatccttccgcaggttcacctacggagaccttgtta 527
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.039
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 491 tgatccttccgcaggttcacctacggagaccttgtta 527
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-72.f
(624 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.038
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 481 tttaatgatccttccgcaggttcacc 506
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 486 tgatccttccgcaggttcacctacggaaaccttgtta 522
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 486 tgatccttccgcaggttcacctacggaaaccttgtta 522
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 486 tgatccttccgcaggttcacctacggaaaccttgtta 522
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 486 tgatccttccgcaggttcacctacggaaaccttgtta 522
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-73.f
(636 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1084 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1084 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1084 0.0
EF095713_1|Thermus thermophilus|16S ribosomal RNA 1084 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1084 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1084 bits (547), Expect = 0.0
Identities = 553/555 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcaatgcccctgtgg 560
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 621 tagctgatgggacgc 635
|||||||||||||||
Sbjct: 335 tagctgatgggacgc 321
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1084 bits (547), Expect = 0.0
Identities = 553/555 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcaatgcccctgtgg 560
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 621 tagctgatgggacgc 635
|||||||||||||||
Sbjct: 238 tagctgatgggacgc 224
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1084 bits (547), Expect = 0.0
Identities = 553/555 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcaatgcccctgtgg 560
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 621 tagctgatgggacgc 635
|||||||||||||||
Sbjct: 245 tagctgatgggacgc 231
>EF095713_1|Thermus thermophilus|16S ribosomal RNA
Length = 1381
Score = 1084 bits (547), Expect = 0.0
Identities = 553/555 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 607
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 547
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 487
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 427
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 367
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 307
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 247
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcaatgcccctgtgg 560
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 246 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 187
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 127
Query: 621 tagctgatgggacgc 635
|||||||||||||||
Sbjct: 126 tagctgatgggacgc 112
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1084 bits (547), Expect = 0.0
Identities = 553/555 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcaatgcccctgtgg 560
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 621 tagctgatgggacgc 635
|||||||||||||||
Sbjct: 238 tagctgatgggacgc 224
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-74.f
(645 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1114 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1114 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1114 0.0
EF095713_1|Thermus thermophilus|16S ribosomal RNA 1114 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1114 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 620 tagctgatgggacgcgggcccatccg 645
||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccg 310
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 620 tagctgatgggacgcgggcccatccg 645
||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccg 213
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 620 tagctgatgggacgcgggcccatccg 645
||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccg 220
>EF095713_1|Thermus thermophilus|16S ribosomal RNA
Length = 1381
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 607
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 547
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 487
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 427
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 367
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 307
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 247
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 187
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 127
Query: 620 tagctgatgggacgcgggcccatccg 645
||||||||||||||||||||||||||
Sbjct: 126 tagctgatgggacgcgggcccatccg 101
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 620 tagctgatgggacgcgggcccatccg 645
||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccg 213
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-75.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1118 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1118 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 441 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 500
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggc 669
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 441 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 500
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggc 572
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 441 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 500
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggc 579
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 441 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 500
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggc 572
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 441 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 500
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggc 580
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-76.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1120 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1120 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1120 0.0
EF095713_1|Thermus thermophilus|16S ribosomal RNA 1120 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1120 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaa 307
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaa 210
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaa 217
>EF095713_1|Thermus thermophilus|16S ribosomal RNA
Length = 1381
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 607
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 547
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 487
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 427
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 367
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 307
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 247
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 187
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 127
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 126 tagctgatgggacgcgggcccatccggaa 98
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaa 210
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-77.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1120 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1120 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1120 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1120 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1120 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 380 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcg 670
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 380 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcg 573
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 380 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcg 580
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 380 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcg 573
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 380 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcg 581
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-78.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
EF095713_1|Thermus thermophilus|16S ribosomal RNA 1118 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1118 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccgga 308
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccgga 211
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccgga 218
>EF095713_1|Thermus thermophilus|16S ribosomal RNA
Length = 1381
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 607
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 547
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 487
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 427
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 367
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 307
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 247
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 187
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 127
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 126 tagctgatgggacgcgggcccatccgga 99
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccgga 211
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-79.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.040
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 96 ggtgaacctgcggaaggatcattaaa 121
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatca 116
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatca 116
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatca 116
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.040
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatca 116
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-80.f
(647 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.039
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 97 ggtgaacctgcggaaggatcattaaa 122
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatca 117
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatca 117
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatca 117
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.039
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatca 117
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-81.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.040
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 487 tttaatgatccttccgcaggttcacc 512
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggagaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggagaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggagaccttgtta 528
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.040
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 492 tgatccttccgcaggttcacctacggagaccttgtta 528
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-82.f
(640 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.039
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 97 ggtgaacctgcggaaggatcattaaa 122
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatca 117
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatca 117
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatca 117
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.039
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatca 117
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-83.f
(626 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.038
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 485 tttaatgatccttccgcaggttcacc 510
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-84.f
(625 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.038
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 94 ggtgaacctgcggaaggatcattaaa 119
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 78 taacaaggtttccgtaggtgaacctgcggaaggatca 114
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 78 taacaaggtttccgtaggtgaacctgcggaaggatca 114
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 78 taacaaggtttccgtaggtgaacctgcggaaggatca 114
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 78 taacaaggtttccgtaggtgaacctgcggaaggatca 114
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-85.f
(635 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1092 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1092 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1092 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1092 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1092 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1092 bits (551), Expect = 0.0
Identities = 551/551 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 622 cgtaaagggcg 632
|||||||||||
Sbjct: 642 cgtaaagggcg 652
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1092 bits (551), Expect = 0.0
Identities = 551/551 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 622 cgtaaagggcg 632
|||||||||||
Sbjct: 545 cgtaaagggcg 555
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1092 bits (551), Expect = 0.0
Identities = 551/551 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 622 cgtaaagggcg 632
|||||||||||
Sbjct: 552 cgtaaagggcg 562
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1092 bits (551), Expect = 0.0
Identities = 551/551 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 622 cgtaaagggcg 632
|||||||||||
Sbjct: 545 cgtaaagggcg 555
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1092 bits (551), Expect = 0.0
Identities = 551/551 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 622 cgtaaagggcg 632
|||||||||||
Sbjct: 553 cgtaaagggcg 563
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-86.f
(635 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1098 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1098 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1098 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1098 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1098 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1098 bits (554), Expect = 0.0
Identities = 554/554 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 621 cgtaaagggcgtgt 634
||||||||||||||
Sbjct: 642 cgtaaagggcgtgt 655
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1098 bits (554), Expect = 0.0
Identities = 554/554 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 621 cgtaaagggcgtgt 634
||||||||||||||
Sbjct: 545 cgtaaagggcgtgt 558
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1098 bits (554), Expect = 0.0
Identities = 554/554 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 621 cgtaaagggcgtgt 634
||||||||||||||
Sbjct: 552 cgtaaagggcgtgt 565
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1098 bits (554), Expect = 0.0
Identities = 554/554 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 621 cgtaaagggcgtgt 634
||||||||||||||
Sbjct: 545 cgtaaagggcgtgt 558
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1098 bits (554), Expect = 0.0
Identities = 554/554 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 621 cgtaaagggcgtgt 634
||||||||||||||
Sbjct: 553 cgtaaagggcgtgt 566
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-87.f
(648 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1120 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1120 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1120 0.0
EF095713_1|Thermus thermophilus|16S ribosomal RNA 1120 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1120 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaa 307
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaa 210
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaa 217
>EF095713_1|Thermus thermophilus|16S ribosomal RNA
Length = 1381
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 607
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 547
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 487
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 427
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 367
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 307
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 247
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 187
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 127
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 126 tagctgatgggacgcgggcccatccggaa 98
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaa 210
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-88.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1130 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1130 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1130 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1130 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1130 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggcggcctggggcgt 671
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgt 574
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggcggcctggggcgt 581
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggcggcctggggcgt 574
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggcggcctggggcgt 582
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-89.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1122 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1122 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1122 0.0
EF095713_1|Thermus thermophilus|16S ribosomal RNA 1122 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1122 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1122 bits (566), Expect = 0.0
Identities = 569/570 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 619 tagctgatgggacgcgggcccatccggaag 648
||||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaag 306
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1122 bits (566), Expect = 0.0
Identities = 569/570 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 619 tagctgatgggacgcgggcccatccggaag 648
||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaag 209
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1122 bits (566), Expect = 0.0
Identities = 569/570 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 619 tagctgatgggacgcgggcccatccggaag 648
||||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaag 216
>EF095713_1|Thermus thermophilus|16S ribosomal RNA
Length = 1381
Score = 1122 bits (566), Expect = 0.0
Identities = 569/570 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 607
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 547
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 487
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 427
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 367
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 307
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 247
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 187
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 127
Query: 619 tagctgatgggacgcgggcccatccggaag 648
||||||||||||||||||||||||||||||
Sbjct: 126 tagctgatgggacgcgggcccatccggaag 97
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1122 bits (566), Expect = 0.0
Identities = 569/570 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 619 tagctgatgggacgcgggcccatccggaag 648
||||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaag 209
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-90.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1110 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1110 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1110 0.0
EF095713_1|Thermus thermophilus|16S ribosomal RNA 1110 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1110 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1110 bits (560), Expect = 0.0
Identities = 566/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 620
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 621 tagctgatgggacgcgggcccatccgga 648
||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccgga 308
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1110 bits (560), Expect = 0.0
Identities = 566/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 620
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 621 tagctgatgggacgcgggcccatccgga 648
||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccgga 211
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1110 bits (560), Expect = 0.0
Identities = 566/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 620
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 621 tagctgatgggacgcgggcccatccgga 648
||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccgga 218
>EF095713_1|Thermus thermophilus|16S ribosomal RNA
Length = 1381
Score = 1110 bits (560), Expect = 0.0
Identities = 566/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 607
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 547
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 487
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 427
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 367
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 307
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 247
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 187
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 620
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 186 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 127
Query: 621 tagctgatgggacgcgggcccatccgga 648
||||||||||||||||||||||||||||
Sbjct: 126 tagctgatgggacgcgggcccatccgga 99
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1110 bits (560), Expect = 0.0
Identities = 566/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 620
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 621 tagctgatgggacgcgggcccatccgga 648
||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccgga 211
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-91.f
(648 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.039
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 485 tttaatgatccttccgcaggttcacc 510
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.039
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 490 tgatccttccgcaggttcacctacggaaaccttgtta 526
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-92.f
(647 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.039
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 95 ggtgaacctgcggaaggatcattaaa 120
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatca 115
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatca 115
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatca 115
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.039
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatca 115
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-93.f
(634 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 48 6e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 48 6e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 48 6e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 40 0.15
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 94 ggtgaacctgcggaaggatcattaaa 119
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 48.1 bits (24), Expect = 6e-04
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 79 aacaaggtttccgtaggtgaacctgcggaaggatca 114
|||||||| |||||||| ||||||||||| ||||||
Sbjct: 1431 aacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 48.1 bits (24), Expect = 6e-04
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 79 aacaaggtttccgtaggtgaacctgcggaaggatca 114
|||||||| |||||||| ||||||||||| ||||||
Sbjct: 1435 aacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 48.1 bits (24), Expect = 6e-04
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 79 aacaaggtttccgtaggtgaacctgcggaaggatca 114
|||||||| |||||||| ||||||||||| ||||||
Sbjct: 1433 aacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 40.1 bits (20), Expect = 0.15
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 79 aacaaggtttccgtaggtgaacctgcggaaggatca 114
|||||||| ||||||| ||||||||||| ||||||
Sbjct: 1420 aacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-94.f
(640 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 52 4e-05
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 52 4e-05
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 52 4e-05
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 44 0.010
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 529 gtaacaaggtttccgtaggtgaacctgcggaaggatca 566
|||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1429 gtaacaaggtatccgtaggggaacctgcggatggatca 1466
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatca 118
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 529 gtaacaaggtttccgtaggtgaacctgcggaaggatca 566
|||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1433 gtaacaaggtatccgtaggggaacctgcggatggatca 1470
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatca 118
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 529 gtaacaaggtttccgtaggtgaacctgcggaaggatca 566
|||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1431 gtaacaaggtatccgtaggggaacctgcggatggatca 1468
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatca 118
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 98 ggtgaacctgcggaaggatcattaaa 123
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 546 ggtgaacctgcggaaggatcattaaa 571
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 44.1 bits (22), Expect = 0.010
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 529 gtaacaaggtttccgtaggtgaacctgcggaaggatca 566
|||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1418 gtaacaaggtagccgtaggggaacctgcggatggatca 1455
Score = 42.1 bits (21), Expect = 0.039
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatca 118
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-95.f
(633 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.038
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 96 ggtgaacctgcggaaggatcattaaa 121
||||||||||||||||||||||||||
Sbjct: 24 ggtgaacctgcggaaggatcattaaa 49
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatca 116
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1430 taacaaggtatccgtaggggaacctgcggatggatca 1466
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatca 116
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1434 taacaaggtatccgtaggggaacctgcggatggatca 1470
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatca 116
||||||||| |||||||| ||||||||||| ||||||
Sbjct: 1432 taacaaggtatccgtaggggaacctgcggatggatca 1468
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatca 116
||||||||| ||||||| ||||||||||| ||||||
Sbjct: 1419 taacaaggtagccgtaggggaacctgcggatggatca 1455
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-96.f
(628 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB603645_1|Micrococcus sp. A02|16S rRNA 52 4e-05
M38637_1|Thermoplasma acidophilum|16S ribosomal RNA 50 2e-04
CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA 50 2e-04
BA000011_1|Thermoplasma volcanium GSS1|16S rRNA 50 2e-04
X97695_1|Pedomicrobium sp.|16S ribosomal RNA 42 0.038
>AB603645_1|Micrococcus sp. A02|16S rRNA
Length = 391
Score = 52.0 bits (26), Expect = 4e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 484 tttaatgatccttccgcaggttcacc 509
||||||||||||||||||||||||||
Sbjct: 49 tttaatgatccttccgcaggttcacc 24
>M38637_1|Thermoplasma acidophilum|16S ribosomal RNA
Length = 1471
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 489 tgatccttccgcaggttcacctacggaaaccttgtta 525
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1466 tgatccatccgcaggttcccctacggataccttgtta 1430
>CP001941_1|Aciduliprofundum boonei T469|16S ribosomal RNA
Length = 1473
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 489 tgatccttccgcaggttcacctacggaaaccttgtta 525
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1470 tgatccatccgcaggttcccctacggataccttgtta 1434
>BA000011_1|Thermoplasma volcanium GSS1|16S rRNA
Length = 1474
Score = 50.1 bits (25), Expect = 2e-04
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 489 tgatccttccgcaggttcacctacggaaaccttgtta 525
|||||| ||||||||||| |||||||| |||||||||
Sbjct: 1468 tgatccatccgcaggttcccctacggataccttgtta 1432
>X97695_1|Pedomicrobium sp.|16S ribosomal RNA
Length = 1456
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 489 tgatccttccgcaggttcacctacggaaaccttgtta 525
|||||| ||||||||||| ||||||| |||||||||
Sbjct: 1455 tgatccatccgcaggttcccctacggctaccttgtta 1419
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
Posted date: Apr 6, 2012 4:12 PM
Number of letters in database: 305,506,631
Number of sequences in database: 298,797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 298797
Number of Hits to DB: 421,938,707
Number of extensions: 55072336
Number of successful extensions: 48487580
Number of sequences better than 10.0: 579980
Number of HSP's gapped: 43865160
Number of HSP's successfully gapped: 40009084
Length of database: 305,506,631
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 13 (26.3 bits)
S2: 17 (34.2 bits)