BLASTN 2.2.20 [Feb-08-2009]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-54.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|4ABR|A  Chain A, Complex Of Smpb, A Tmrna Fragment And E...  1118   0.0  
pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
           With The 70s Ribosome
          Length = 1522

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccgga 219
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
BLAST Search Results