BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-50.f
(650 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1011 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1011 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1011 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1011 0.0
AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA 1011 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1011 bits (510), Expect = 0.0
Identities = 546/558 (97%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 161
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 221
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 281
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 341
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 401
Query: 380 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 402 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 461
Query: 440 ggcgcaagcctgactgagcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 499
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 521
Query: 500 tgaacccgggacgaaaccccccacgaggggactgacggtacctgggtaataccgcctgcc 559
||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||
Sbjct: 522 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 581
Query: 560 aactccttgccagcaaccgcggtaataccgacggcgcgagcgttacccggattcactggg 619
|||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 582 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 641
Query: 620 cgtaaagggcgtgtaggc 637
||||||||||||||||||
Sbjct: 642 cgtaaagggcgtgtaggc 659
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1011 bits (510), Expect = 0.0
Identities = 546/558 (97%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 380 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 440 ggcgcaagcctgactgagcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 499
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 500 tgaacccgggacgaaaccccccacgaggggactgacggtacctgggtaataccgcctgcc 559
||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 560 aactccttgccagcaaccgcggtaataccgacggcgcgagcgttacccggattcactggg 619
|||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 620 cgtaaagggcgtgtaggc 637
||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggc 562
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1011 bits (510), Expect = 0.0
Identities = 546/558 (97%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 71
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 131
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 191
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 251
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 311
Query: 380 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 312 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 371
Query: 440 ggcgcaagcctgactgagcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 499
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 431
Query: 500 tgaacccgggacgaaaccccccacgaggggactgacggtacctgggtaataccgcctgcc 559
||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||
Sbjct: 432 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 491
Query: 560 aactccttgccagcaaccgcggtaataccgacggcgcgagcgttacccggattcactggg 619
|||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 492 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 551
Query: 620 cgtaaagggcgtgtaggc 637
||||||||||||||||||
Sbjct: 552 cgtaaagggcgtgtaggc 569
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1011 bits (510), Expect = 0.0
Identities = 546/558 (97%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 64
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 124
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 184
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 244
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 304
Query: 380 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 305 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 364
Query: 440 ggcgcaagcctgactgagcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 499
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 424
Query: 500 tgaacccgggacgaaaccccccacgaggggactgacggtacctgggtaataccgcctgcc 559
||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||
Sbjct: 425 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 484
Query: 560 aactccttgccagcaaccgcggtaataccgacggcgcgagcgttacccggattcactggg 619
|||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 485 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 544
Query: 620 cgtaaagggcgtgtaggc 637
||||||||||||||||||
Sbjct: 545 cgtaaagggcgtgtaggc 562
>AP008226_2|Thermus thermophilus HB8|16S ribosomal RNA
Length = 1504
Score = 1011 bits (510), Expect = 0.0
Identities = 546/558 (97%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 72
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 132
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 192
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 252
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 312
Query: 380 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 313 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 372
Query: 440 ggcgcaagcctgactgagcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 499
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 432
Query: 500 tgaacccgggacgaaaccccccacgaggggactgacggtacctgggtaataccgcctgcc 559
||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||
Sbjct: 433 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 492
Query: 560 aactccttgccagcaaccgcggtaataccgacggcgcgagcgttacccggattcactggg 619
|||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 493 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 552
Query: 620 cgtaaagggcgtgtaggc 637
||||||||||||||||||
Sbjct: 553 cgtaaagggcgtgtaggc 570
BLAST Search Results