BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-01.f
         (645 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|4ABR|A  Chain A, Complex Of Smpb, A Tmrna Fragment And E...  1114   0.0  
pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1114   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1114   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1114   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1114   0.0  
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
           With The 70s Ribosome
          Length = 1522

 Score = 1114 bits (562), Expect = 0.0
 Identities = 565/566 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247

                                     
Query: 620 tagctgatgggacgcgggcccatccg 645
           ||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccg 221
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1114 bits (562), Expect = 0.0
 Identities = 565/566 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                     
Query: 620 tagctgatgggacgcgggcccatccg 645
           ||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccg 216
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1114 bits (562), Expect = 0.0
 Identities = 565/566 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                     
Query: 620 tagctgatgggacgcgggcccatccg 645
           ||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccg 216
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1114 bits (562), Expect = 0.0
 Identities = 565/566 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                     
Query: 620 tagctgatgggacgcgggcccatccg 645
           ||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccg 216
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1114 bits (562), Expect = 0.0
 Identities = 565/566 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                     
Query: 620 tagctgatgggacgcgggcccatccg 645
           ||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccg 216
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-02.f
         (649 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1128   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1128   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1128   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1128   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1128   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1128 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1128 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1128 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1128 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1128 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-03.f
         (639 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1100   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1100   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1100   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1100   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1100   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1100 bits (555), Expect = 0.0
 Identities = 555/555 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                          
Query: 621 cgtaaagggcgtgta 635
           |||||||||||||||
Sbjct: 548 cgtaaagggcgtgta 562
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1100 bits (555), Expect = 0.0
 Identities = 555/555 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                          
Query: 621 cgtaaagggcgtgta 635
           |||||||||||||||
Sbjct: 548 cgtaaagggcgtgta 562
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1100 bits (555), Expect = 0.0
 Identities = 555/555 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                          
Query: 621 cgtaaagggcgtgta 635
           |||||||||||||||
Sbjct: 548 cgtaaagggcgtgta 562
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1100 bits (555), Expect = 0.0
 Identities = 555/555 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                          
Query: 621 cgtaaagggcgtgta 635
           |||||||||||||||
Sbjct: 548 cgtaaagggcgtgta 562
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1100 bits (555), Expect = 0.0
 Identities = 555/555 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                          
Query: 621 cgtaaagggcgtgta 635
           |||||||||||||||
Sbjct: 548 cgtaaagggcgtgta 562
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-04.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1116   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1116   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1116   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1116   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1116   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1116 bits (563), Expect = 0.0
 Identities = 563/563 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                  
Query: 621 cgtaaagggcgtgtaggcggcct 643
           |||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1116 bits (563), Expect = 0.0
 Identities = 563/563 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                  
Query: 621 cgtaaagggcgtgtaggcggcct 643
           |||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1116 bits (563), Expect = 0.0
 Identities = 563/563 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                  
Query: 621 cgtaaagggcgtgtaggcggcct 643
           |||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1116 bits (563), Expect = 0.0
 Identities = 563/563 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                  
Query: 621 cgtaaagggcgtgtaggcggcct 643
           |||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1116 bits (563), Expect = 0.0
 Identities = 563/563 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                  
Query: 621 cgtaaagggcgtgtaggcggcct 643
           |||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-05.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1128   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1128   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1128   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1128   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1128   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1128 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1128 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1128 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1128 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1128 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-06.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|4ABR|A  Chain A, Complex Of Smpb, A Tmrna Fragment And E...  1112   0.0  
pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1112   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1112   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1112   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1112   0.0  
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
           With The 70s Ribosome
          Length = 1522

 Score = 1112 bits (561), Expect = 0.0
 Identities = 567/569 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607

                                                                       
Query: 260 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247

                                        
Query: 620 tagctgatgggacgcgggcccatccggaa 648
           |||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaa 218
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1112 bits (561), Expect = 0.0
 Identities = 567/569 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                        
Query: 620 tagctgatgggacgcgggcccatccggaa 648
           |||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaa 213
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1112 bits (561), Expect = 0.0
 Identities = 567/569 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                        
Query: 620 tagctgatgggacgcgggcccatccggaa 648
           |||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaa 213
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1112 bits (561), Expect = 0.0
 Identities = 567/569 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                        
Query: 620 tagctgatgggacgcgggcccatccggaa 648
           |||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaa 213
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1112 bits (561), Expect = 0.0
 Identities = 567/569 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                        
Query: 620 tagctgatgggacgcgggcccatccggaa 648
           |||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaa 213
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-07.f
         (631 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   844   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   844   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   844   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   844   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   844   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-08.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   844   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   844   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   844   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   844   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   844   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-09.f
         (643 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   842   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   842   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   842   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   842   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   842   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 78  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69

                                                                       
Query: 138 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 197
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129

                                                                       
Query: 198 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189

                                                                       
Query: 258 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249

                                                                       
Query: 318 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309

                                                                       
Query: 378 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369

                                                                       
Query: 438 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429

                                     
Query: 498 tcttggttctcgcatcgatgaagaac 523
           ||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 78  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 138 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 197
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 198 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 258 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 318 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 378 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 438 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 498 tcttggttctcgcatcgatgaagaac 523
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 78  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67

                                                                       
Query: 138 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 197
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127

                                                                       
Query: 198 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187

                                                                       
Query: 258 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247

                                                                       
Query: 318 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307

                                                                       
Query: 378 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367

                                                                       
Query: 438 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427

                                     
Query: 498 tcttggttctcgcatcgatgaagaac 523
           ||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 78  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65

                                                                       
Query: 138 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 197
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125

                                                                       
Query: 198 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185

                                                                       
Query: 258 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245

                                                                       
Query: 318 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305

                                                                       
Query: 378 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365

                                                                       
Query: 438 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425

                                     
Query: 498 tcttggttctcgcatcgatgaagaac 523
           ||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 78  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 138 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 197
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 198 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 258 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 318 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 378 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 438 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 498 tcttggttctcgcatcgatgaagaac 523
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-10.f
         (637 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   844   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   844   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   844   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   844   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   844   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-11.f
         (632 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   844   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   844   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   844   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   844   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   844   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 81  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                      
Query: 501 gcaggttcacctacggaaaccttgtta 527
           |||||||||||||||||||||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 81  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 501 gcaggttcacctacggaaaccttgtta 527
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 81  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                      
Query: 501 gcaggttcacctacggaaaccttgtta 527
           |||||||||||||||||||||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 81  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                      
Query: 501 gcaggttcacctacggaaaccttgtta 527
           |||||||||||||||||||||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 81  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 501 gcaggttcacctacggaaaccttgtta 527
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-12.f
         (619 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   839   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   839   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   839   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   839   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   839   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  839 bits (423), Expect = 0.0
 Identities = 440/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 82  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 322 atctctcaccgtttggaatagcaagaaagagacttacaagcctagcaagaccgcgcactt 381
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                       
Query: 502 gcaggttcacctacggaaaccttgttac 529
           ||||||||||||||||||||||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgttac 9

 Score =  174 bits (88), Expect = 5e-40
 Identities = 88/88 (100%)
 Strand = Plus / Minus

                                                                       
Query: 529 catcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccag 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 catcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccag 390

                                       
Query: 589 ttacgaaaattcttgtttttgacaaaaa 616
           ||||||||||||||||||||||||||||
Sbjct: 389 ttacgaaaattcttgtttttgacaaaaa 362
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  839 bits (423), Expect = 0.0
 Identities = 440/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 82  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 322 atctctcaccgtttggaatagcaagaaagagacttacaagcctagcaagaccgcgcactt 381
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                       
Query: 502 gcaggttcacctacggaaaccttgttac 529
           ||||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgttac 8

 Score =  174 bits (88), Expect = 5e-40
 Identities = 88/88 (100%)
 Strand = Plus / Minus

                                                                       
Query: 529 catcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccag 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 catcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccag 389

                                       
Query: 589 ttacgaaaattcttgtttttgacaaaaa 616
           ||||||||||||||||||||||||||||
Sbjct: 388 ttacgaaaattcttgtttttgacaaaaa 361
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  839 bits (423), Expect = 0.0
 Identities = 440/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 82  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 322 atctctcaccgtttggaatagcaagaaagagacttacaagcctagcaagaccgcgcactt 381
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                       
Query: 502 gcaggttcacctacggaaaccttgttac 529
           ||||||||||||||||||||||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgttac 7

 Score =  174 bits (88), Expect = 5e-40
 Identities = 88/88 (100%)
 Strand = Plus / Minus

                                                                       
Query: 529 catcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccag 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 catcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccag 388

                                       
Query: 589 ttacgaaaattcttgtttttgacaaaaa 616
           ||||||||||||||||||||||||||||
Sbjct: 387 ttacgaaaattcttgtttttgacaaaaa 360
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  839 bits (423), Expect = 0.0
 Identities = 440/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 82  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 322 atctctcaccgtttggaatagcaagaaagagacttacaagcctagcaagaccgcgcactt 381
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                       
Query: 502 gcaggttcacctacggaaaccttgttac 529
           ||||||||||||||||||||||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgttac 5

 Score =  174 bits (88), Expect = 5e-40
 Identities = 88/88 (100%)
 Strand = Plus / Minus

                                                                       
Query: 529 catcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccag 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccag 386

                                       
Query: 589 ttacgaaaattcttgtttttgacaaaaa 616
           ||||||||||||||||||||||||||||
Sbjct: 385 ttacgaaaattcttgtttttgacaaaaa 358
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  839 bits (423), Expect = 0.0
 Identities = 440/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 82  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 322 atctctcaccgtttggaatagcaagaaagagacttacaagcctagcaagaccgcgcactt 381
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                       
Query: 502 gcaggttcacctacggaaaccttgttac 529
           ||||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgttac 8

 Score =  174 bits (88), Expect = 5e-40
 Identities = 88/88 (100%)
 Strand = Plus / Minus

                                                                       
Query: 529 catcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccag 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 catcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccag 389

                                       
Query: 589 ttacgaaaattcttgtttttgacaaaaa 616
           ||||||||||||||||||||||||||||
Sbjct: 388 ttacgaaaattcttgtttttgacaaaaa 361
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-13.f
         (644 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1112   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1112   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1112   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1112   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1112   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1112 bits (561), Expect = 0.0
 Identities = 561/561 (100%)
 Strand = Plus / Plus

                                                                       
Query: 82  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                
Query: 622 cgtaaagggcgtgtaggcggc 642
           |||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggc 568
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1112 bits (561), Expect = 0.0
 Identities = 561/561 (100%)
 Strand = Plus / Plus

                                                                       
Query: 82  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                
Query: 622 cgtaaagggcgtgtaggcggc 642
           |||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggc 568
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1112 bits (561), Expect = 0.0
 Identities = 561/561 (100%)
 Strand = Plus / Plus

                                                                       
Query: 82  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                
Query: 622 cgtaaagggcgtgtaggcggc 642
           |||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggc 568
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1112 bits (561), Expect = 0.0
 Identities = 561/561 (100%)
 Strand = Plus / Plus

                                                                       
Query: 82  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                
Query: 622 cgtaaagggcgtgtaggcggc 642
           |||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggc 568
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1112 bits (561), Expect = 0.0
 Identities = 561/561 (100%)
 Strand = Plus / Plus

                                                                       
Query: 82  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                
Query: 622 cgtaaagggcgtgtaggcggc 642
           |||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggc 568
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-14.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1126   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1126   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1126   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1126   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1126   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1126 bits (568), Expect = 0.0
 Identities = 568/568 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                       
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
           ||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1126 bits (568), Expect = 0.0
 Identities = 568/568 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                       
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
           ||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1126 bits (568), Expect = 0.0
 Identities = 568/568 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                       
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
           ||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1126 bits (568), Expect = 0.0
 Identities = 568/568 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                       
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
           ||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1126 bits (568), Expect = 0.0
 Identities = 568/568 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                       
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
           ||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-15.f
         (643 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1102   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1102   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1102   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1102   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1102   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1102 bits (556), Expect = 0.0
 Identities = 559/560 (99%)
 Strand = Plus / Plus

                                                                       
Query: 82  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 382 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                               
Query: 622 cgtaaagggcgtgtaggcgg 641
           ||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcgg 567
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1102 bits (556), Expect = 0.0
 Identities = 559/560 (99%)
 Strand = Plus / Plus

                                                                       
Query: 82  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 382 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                               
Query: 622 cgtaaagggcgtgtaggcgg 641
           ||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcgg 567
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1102 bits (556), Expect = 0.0
 Identities = 559/560 (99%)
 Strand = Plus / Plus

                                                                       
Query: 82  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 382 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                               
Query: 622 cgtaaagggcgtgtaggcgg 641
           ||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcgg 567
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1102 bits (556), Expect = 0.0
 Identities = 559/560 (99%)
 Strand = Plus / Plus

                                                                       
Query: 82  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 382 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                               
Query: 622 cgtaaagggcgtgtaggcgg 641
           ||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcgg 567
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1102 bits (556), Expect = 0.0
 Identities = 559/560 (99%)
 Strand = Plus / Plus

                                                                       
Query: 82  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 382 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                               
Query: 622 cgtaaagggcgtgtaggcgg 641
           ||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcgg 567
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-16.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1128   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1128   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1128   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1128   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1128   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1128 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1128 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1128 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1128 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1128 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-17.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|4ABR|A  Chain A, Complex Of Smpb, A Tmrna Fragment And E...  1102   0.0  
pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1102   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1102   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1102   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1102   0.0  
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
           With The 70s Ribosome
          Length = 1522

 Score = 1102 bits (556), Expect = 0.0
 Identities = 565/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 81  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727

                                                                       
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667

                                                                       
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607

                                                                       
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547

                                                                       
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487

                                                                       
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427

                                                                       
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367

                                                                       
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307

                                                                       
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 620
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247

                                       
Query: 621 tagctgatggggcgcgggcccatccgga 648
           ||||||||||| ||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccgga 219
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1102 bits (556), Expect = 0.0
 Identities = 565/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 81  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 620
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 621 tagctgatggggcgcgggcccatccgga 648
           ||||||||||| ||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1102 bits (556), Expect = 0.0
 Identities = 565/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 81  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 620
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 621 tagctgatggggcgcgggcccatccgga 648
           ||||||||||| ||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1102 bits (556), Expect = 0.0
 Identities = 565/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 81  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 620
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 621 tagctgatggggcgcgggcccatccgga 648
           ||||||||||| ||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1102 bits (556), Expect = 0.0
 Identities = 565/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 81  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 620
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 621 tagctgatggggcgcgggcccatccgga 648
           ||||||||||| ||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-18.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|4ABR|A  Chain A, Complex Of Smpb, A Tmrna Fragment And E...  1106   0.0  
pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1106   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1106   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1106   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1106   0.0  
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
           With The 70s Ribosome
          Length = 1522

 Score = 1106 bits (558), Expect = 0.0
 Identities = 567/570 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547

                                                                       
Query: 319 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 378
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367

                                                                       
Query: 499 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247

                                         
Query: 619 tagctgatgggacgcgggcccatccggaag 648
           ||||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaag 217
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1106 bits (558), Expect = 0.0
 Identities = 567/570 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 319 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 378
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 499 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                         
Query: 619 tagctgatgggacgcgggcccatccggaag 648
           ||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaag 212
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1106 bits (558), Expect = 0.0
 Identities = 567/570 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 319 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 378
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 499 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                         
Query: 619 tagctgatgggacgcgggcccatccggaag 648
           ||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaag 212
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1106 bits (558), Expect = 0.0
 Identities = 567/570 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 319 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 378
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 499 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                         
Query: 619 tagctgatgggacgcgggcccatccggaag 648
           ||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaag 212
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1106 bits (558), Expect = 0.0
 Identities = 567/570 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 319 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 378
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 499 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                         
Query: 619 tagctgatgggacgcgggcccatccggaag 648
           ||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaag 212
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-19.f
         (649 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   842   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   842   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   842   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   842   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   842   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429

                                     
Query: 500 tcttggttctcgcatcgatgaagaac 525
           ||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 500 tcttggttctcgcatcgatgaagaac 525
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427

                                     
Query: 500 tcttggttctcgcatcgatgaagaac 525
           ||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425

                                     
Query: 500 tcttggttctcgcatcgatgaagaac 525
           ||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 500 tcttggttctcgcatcgatgaagaac 525
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-20.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   644   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   644   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   644   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   644   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   644   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  644 bits (325), Expect = 0.0
 Identities = 339/346 (97%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309

                                                         
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattc 426
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattc 355
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  644 bits (325), Expect = 0.0
 Identities = 339/346 (97%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                         
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattc 426
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattc 354
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  644 bits (325), Expect = 0.0
 Identities = 339/346 (97%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307

                                                         
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattc 426
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattc 353
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  644 bits (325), Expect = 0.0
 Identities = 339/346 (97%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305

                                                         
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattc 426
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattc 351
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  644 bits (325), Expect = 0.0
 Identities = 339/346 (97%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                         
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattc 426
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattc 354
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-21.f
         (647 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   844   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   844   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   844   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   844   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   844   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-22.f
         (639 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   842   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   842   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   842   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   842   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   842   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69

                                                                       
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129

                                                                       
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189

                                                                       
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249

                                                                       
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309

                                                                       
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369

                                                                       
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429

                                     
Query: 499 tcttggttctcgcatcgatgaagaac 524
           ||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 499 tcttggttctcgcatcgatgaagaac 524
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67

                                                                       
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127

                                                                       
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187

                                                                       
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247

                                                                       
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307

                                                                       
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367

                                                                       
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427

                                     
Query: 499 tcttggttctcgcatcgatgaagaac 524
           ||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65

                                                                       
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125

                                                                       
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185

                                                                       
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245

                                                                       
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305

                                                                       
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365

                                                                       
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425

                                     
Query: 499 tcttggttctcgcatcgatgaagaac 524
           ||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 499 tcttggttctcgcatcgatgaagaac 524
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-23.f
         (634 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   846   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   846   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   846   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   846   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   846   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  846 bits (427), Expect = 0.0
 Identities = 441/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 82  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                       
Query: 502 gcaggttcacctacggaaaccttgttac 529
           ||||||||||||||||||||||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgttac 9

 Score =  204 bits (103), Expect = 6e-49
 Identities = 103/103 (100%)
 Strand = Plus / Minus

                                                                       
Query: 530 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                      
Query: 590 tttccagttacgaaaattcttgtttttgacaaaaatttaatga 632
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatga 354
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  846 bits (427), Expect = 0.0
 Identities = 441/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 82  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                       
Query: 502 gcaggttcacctacggaaaccttgttac 529
           ||||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgttac 8

 Score =  204 bits (103), Expect = 6e-49
 Identities = 103/103 (100%)
 Strand = Plus / Minus

                                                                       
Query: 530 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                      
Query: 590 tttccagttacgaaaattcttgtttttgacaaaaatttaatga 632
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatga 353
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  846 bits (427), Expect = 0.0
 Identities = 441/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 82  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                       
Query: 502 gcaggttcacctacggaaaccttgttac 529
           ||||||||||||||||||||||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgttac 7

 Score =  204 bits (103), Expect = 6e-49
 Identities = 103/103 (100%)
 Strand = Plus / Minus

                                                                       
Query: 530 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                      
Query: 590 tttccagttacgaaaattcttgtttttgacaaaaatttaatga 632
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatga 352
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  846 bits (427), Expect = 0.0
 Identities = 441/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 82  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                       
Query: 502 gcaggttcacctacggaaaccttgttac 529
           ||||||||||||||||||||||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgttac 5

 Score =  204 bits (103), Expect = 6e-49
 Identities = 103/103 (100%)
 Strand = Plus / Minus

                                                                       
Query: 530 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                      
Query: 590 tttccagttacgaaaattcttgtttttgacaaaaatttaatga 632
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatga 350
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  846 bits (427), Expect = 0.0
 Identities = 441/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 82  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                       
Query: 502 gcaggttcacctacggaaaccttgttac 529
           ||||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgttac 8

 Score =  204 bits (103), Expect = 6e-49
 Identities = 103/103 (100%)
 Strand = Plus / Minus

                                                                       
Query: 530 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                      
Query: 590 tttccagttacgaaaattcttgtttttgacaaaaatttaatga 632
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatga 353
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-24.f
         (623 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   844   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   844   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   844   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   844   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   844   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-25.f
         (630 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1082   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1082   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1082   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1082   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1082   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1082 bits (546), Expect = 0.0
 Identities = 546/546 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                 
Query: 620 cgtaaa 625
           ||||||
Sbjct: 548 cgtaaa 553
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1082 bits (546), Expect = 0.0
 Identities = 546/546 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                 
Query: 620 cgtaaa 625
           ||||||
Sbjct: 548 cgtaaa 553
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1082 bits (546), Expect = 0.0
 Identities = 546/546 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                 
Query: 620 cgtaaa 625
           ||||||
Sbjct: 548 cgtaaa 553
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1082 bits (546), Expect = 0.0
 Identities = 546/546 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                 
Query: 620 cgtaaa 625
           ||||||
Sbjct: 548 cgtaaa 553
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1082 bits (546), Expect = 0.0
 Identities = 546/546 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                 
Query: 620 cgtaaa 625
           ||||||
Sbjct: 548 cgtaaa 553
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-26.f
         (649 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1126   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1126   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1126   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1126   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1126   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1126 bits (568), Expect = 0.0
 Identities = 568/568 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                       
Query: 620 cgtaaagggcgtgtaggcggcctggggc 647
           ||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1126 bits (568), Expect = 0.0
 Identities = 568/568 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                       
Query: 620 cgtaaagggcgtgtaggcggcctggggc 647
           ||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1126 bits (568), Expect = 0.0
 Identities = 568/568 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                       
Query: 620 cgtaaagggcgtgtaggcggcctggggc 647
           ||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1126 bits (568), Expect = 0.0
 Identities = 568/568 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                       
Query: 620 cgtaaagggcgtgtaggcggcctggggc 647
           ||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1126 bits (568), Expect = 0.0
 Identities = 568/568 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                       
Query: 620 cgtaaagggcgtgtaggcggcctggggc 647
           ||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-27.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1124   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1124   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1124   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1124   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1124   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1124 bits (567), Expect = 0.0
 Identities = 567/567 (100%)
 Strand = Plus / Plus

                                                                       
Query: 82  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                      
Query: 622 cgtaaagggcgtgtaggcggcctgggg 648
           |||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctgggg 574
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1124 bits (567), Expect = 0.0
 Identities = 567/567 (100%)
 Strand = Plus / Plus

                                                                       
Query: 82  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                      
Query: 622 cgtaaagggcgtgtaggcggcctgggg 648
           |||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctgggg 574
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1124 bits (567), Expect = 0.0
 Identities = 567/567 (100%)
 Strand = Plus / Plus

                                                                       
Query: 82  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                      
Query: 622 cgtaaagggcgtgtaggcggcctgggg 648
           |||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctgggg 574
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1124 bits (567), Expect = 0.0
 Identities = 567/567 (100%)
 Strand = Plus / Plus

                                                                       
Query: 82  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                      
Query: 622 cgtaaagggcgtgtaggcggcctgggg 648
           |||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctgggg 574
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1124 bits (567), Expect = 0.0
 Identities = 567/567 (100%)
 Strand = Plus / Plus

                                                                       
Query: 82  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                      
Query: 622 cgtaaagggcgtgtaggcggcctgggg 648
           |||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctgggg 574
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-28.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1116   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1116   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1116   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1116   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1116   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1116 bits (563), Expect = 0.0
 Identities = 563/563 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                  
Query: 621 cgtaaagggcgtgtaggcggcct 643
           |||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1116 bits (563), Expect = 0.0
 Identities = 563/563 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                  
Query: 621 cgtaaagggcgtgtaggcggcct 643
           |||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1116 bits (563), Expect = 0.0
 Identities = 563/563 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                  
Query: 621 cgtaaagggcgtgtaggcggcct 643
           |||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1116 bits (563), Expect = 0.0
 Identities = 563/563 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                  
Query: 621 cgtaaagggcgtgtaggcggcct 643
           |||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1116 bits (563), Expect = 0.0
 Identities = 563/563 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                  
Query: 621 cgtaaagggcgtgtaggcggcct 643
           |||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-29.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1122   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1122   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1122   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1122   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1122   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1122 bits (566), Expect = 0.0
 Identities = 566/566 (100%)
 Strand = Plus / Plus

                                                                       
Query: 83  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                     
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
           ||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggg 573
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1122 bits (566), Expect = 0.0
 Identities = 566/566 (100%)
 Strand = Plus / Plus

                                                                       
Query: 83  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                     
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
           ||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggg 573
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1122 bits (566), Expect = 0.0
 Identities = 566/566 (100%)
 Strand = Plus / Plus

                                                                       
Query: 83  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                     
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
           ||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggg 573
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1122 bits (566), Expect = 0.0
 Identities = 566/566 (100%)
 Strand = Plus / Plus

                                                                       
Query: 83  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                     
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
           ||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggg 573
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1122 bits (566), Expect = 0.0
 Identities = 566/566 (100%)
 Strand = Plus / Plus

                                                                       
Query: 83  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                     
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
           ||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggg 573
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-30.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...   729   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...   729   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...   729   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...   729   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...   729   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score =  729 bits (368), Expect = 0.0
 Identities = 368/368 (100%)
 Strand = Plus / Minus

                                                                       
Query: 80  cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316

                                                                       
Query: 140 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256

                                                                       
Query: 200 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196

                                                                       
Query: 260 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136

                                                                       
Query: 320 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76

                                                                       
Query: 380 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16

                   
Query: 440 ggatcaaa 447
           ||||||||
Sbjct: 15  ggatcaaa 8
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score =  729 bits (368), Expect = 0.0
 Identities = 368/368 (100%)
 Strand = Plus / Minus

                                                                       
Query: 80  cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316

                                                                       
Query: 140 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256

                                                                       
Query: 200 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196

                                                                       
Query: 260 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136

                                                                       
Query: 320 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76

                                                                       
Query: 380 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16

                   
Query: 440 ggatcaaa 447
           ||||||||
Sbjct: 15  ggatcaaa 8
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score =  729 bits (368), Expect = 0.0
 Identities = 368/368 (100%)
 Strand = Plus / Minus

                                                                       
Query: 80  cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316

                                                                       
Query: 140 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256

                                                                       
Query: 200 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196

                                                                       
Query: 260 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136

                                                                       
Query: 320 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76

                                                                       
Query: 380 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16

                   
Query: 440 ggatcaaa 447
           ||||||||
Sbjct: 15  ggatcaaa 8
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score =  729 bits (368), Expect = 0.0
 Identities = 368/368 (100%)
 Strand = Plus / Minus

                                                                       
Query: 80  cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316

                                                                       
Query: 140 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256

                                                                       
Query: 200 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196

                                                                       
Query: 260 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136

                                                                       
Query: 320 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76

                                                                       
Query: 380 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16

                   
Query: 440 ggatcaaa 447
           ||||||||
Sbjct: 15  ggatcaaa 8
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score =  729 bits (368), Expect = 0.0
 Identities = 368/368 (100%)
 Strand = Plus / Minus

                                                                       
Query: 80  cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316

                                                                       
Query: 140 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256

                                                                       
Query: 200 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196

                                                                       
Query: 260 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136

                                                                       
Query: 320 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76

                                                                       
Query: 380 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16

                   
Query: 440 ggatcaaa 447
           ||||||||
Sbjct: 15  ggatcaaa 8
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-31.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   846   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   846   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   846   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   846   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   846   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  846 bits (427), Expect = 0.0
 Identities = 441/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 78  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                       
Query: 498 gcaggttcacctacggaaaccttgttac 525
           ||||||||||||||||||||||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgttac 9

 Score =  244 bits (123), Expect = 7e-61
 Identities = 123/123 (100%)
 Strand = Plus / Minus

                                                                       
Query: 526 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 585
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 586 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 645
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

              
Query: 646 tgt 648
           |||
Sbjct: 336 tgt 334
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  846 bits (427), Expect = 0.0
 Identities = 441/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 78  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                       
Query: 498 gcaggttcacctacggaaaccttgttac 525
           ||||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgttac 8

 Score =  244 bits (123), Expect = 7e-61
 Identities = 123/123 (100%)
 Strand = Plus / Minus

                                                                       
Query: 526 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 585
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 586 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 645
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

              
Query: 646 tgt 648
           |||
Sbjct: 335 tgt 333
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  846 bits (427), Expect = 0.0
 Identities = 441/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 78  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                       
Query: 498 gcaggttcacctacggaaaccttgttac 525
           ||||||||||||||||||||||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgttac 7

 Score =  244 bits (123), Expect = 7e-61
 Identities = 123/123 (100%)
 Strand = Plus / Minus

                                                                       
Query: 526 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 585
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 586 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 645
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

              
Query: 646 tgt 648
           |||
Sbjct: 334 tgt 332
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  846 bits (427), Expect = 0.0
 Identities = 441/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 78  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                       
Query: 498 gcaggttcacctacggaaaccttgttac 525
           ||||||||||||||||||||||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgttac 5

 Score =  244 bits (123), Expect = 7e-61
 Identities = 123/123 (100%)
 Strand = Plus / Minus

                                                                       
Query: 526 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 585
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 586 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 645
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

              
Query: 646 tgt 648
           |||
Sbjct: 332 tgt 330
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  846 bits (427), Expect = 0.0
 Identities = 441/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 78  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                       
Query: 498 gcaggttcacctacggaaaccttgttac 525
           ||||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgttac 8

 Score =  244 bits (123), Expect = 7e-61
 Identities = 123/123 (100%)
 Strand = Plus / Minus

                                                                       
Query: 526 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 585
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 586 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 645
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

              
Query: 646 tgt 648
           |||
Sbjct: 335 tgt 333
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-32.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   844   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   844   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   844   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   844   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   844   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-33.f
         (648 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   844   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   844   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   844   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   844   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   844   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429

                                      
Query: 500 tcttggttctcgcatcgatgaagaacg 526
           |||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaacg 456

 Score =  196 bits (99), Expect = 1e-46
 Identities = 113/120 (94%)
 Strand = Plus / Plus

                                                                       
Query: 527 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 586
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 68

                                                                       
Query: 587 aaaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaaga 646
           ||||||||       |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaaga 128
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                      
Query: 500 tcttggttctcgcatcgatgaagaacg 526
           |||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaacg 455

 Score =  196 bits (99), Expect = 1e-46
 Identities = 113/120 (94%)
 Strand = Plus / Plus

                                                                       
Query: 527 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 586
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 67

                                                                       
Query: 587 aaaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaaga 646
           ||||||||       |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aaaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaaga 127
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427

                                      
Query: 500 tcttggttctcgcatcgatgaagaacg 526
           |||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaacg 454

 Score =  196 bits (99), Expect = 1e-46
 Identities = 113/120 (94%)
 Strand = Plus / Plus

                                                                       
Query: 527 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 586
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7   gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 66

                                                                       
Query: 587 aaaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaaga 646
           ||||||||       |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  aaaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaaga 126
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425

                                      
Query: 500 tcttggttctcgcatcgatgaagaacg 526
           |||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaacg 452

 Score =  196 bits (99), Expect = 1e-46
 Identities = 113/120 (94%)
 Strand = Plus / Plus

                                                                       
Query: 527 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 586
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5   gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 64

                                                                       
Query: 587 aaaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaaga 646
           ||||||||       |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  aaaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaaga 124
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                      
Query: 500 tcttggttctcgcatcgatgaagaacg 526
           |||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaacg 455

 Score =  196 bits (99), Expect = 1e-46
 Identities = 113/120 (94%)
 Strand = Plus / Plus

                                                                       
Query: 527 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 586
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 67

                                                                       
Query: 587 aaaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaaga 646
           ||||||||       |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aaaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaaga 127
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-34.f
         (640 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   835   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   835   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   835   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   835   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   835   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  835 bits (421), Expect = 0.0
 Identities = 438/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69

                                                                       
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129

                                                                       
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189

                                                                       
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249

                                                                       
Query: 319 tttcaatacaacacactgtggagttttcatatcttcgcaactttttctttgggcattcga 378
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309

                                                                       
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369

                                                                       
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429

                                     
Query: 499 tcttggttctcgcatcgatgaagaac 524
           ||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  835 bits (421), Expect = 0.0
 Identities = 438/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 319 tttcaatacaacacactgtggagttttcatatcttcgcaactttttctttgggcattcga 378
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 499 tcttggttctcgcatcgatgaagaac 524
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  835 bits (421), Expect = 0.0
 Identities = 438/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67

                                                                       
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127

                                                                       
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187

                                                                       
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247

                                                                       
Query: 319 tttcaatacaacacactgtggagttttcatatcttcgcaactttttctttgggcattcga 378
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307

                                                                       
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367

                                                                       
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427

                                     
Query: 499 tcttggttctcgcatcgatgaagaac 524
           ||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  835 bits (421), Expect = 0.0
 Identities = 438/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65

                                                                       
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125

                                                                       
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185

                                                                       
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245

                                                                       
Query: 319 tttcaatacaacacactgtggagttttcatatcttcgcaactttttctttgggcattcga 378
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305

                                                                       
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365

                                                                       
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425

                                     
Query: 499 tcttggttctcgcatcgatgaagaac 524
           ||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  835 bits (421), Expect = 0.0
 Identities = 438/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 319 tttcaatacaacacactgtggagttttcatatcttcgcaactttttctttgggcattcga 378
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 499 tcttggttctcgcatcgatgaagaac 524
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-35.f
         (636 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   844   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   844   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   844   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   844   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   844   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 78  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                      
Query: 498 gcaggttcacctacggaaaccttgtta 524
           |||||||||||||||||||||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 78  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 498 gcaggttcacctacggaaaccttgtta 524
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 78  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                      
Query: 498 gcaggttcacctacggaaaccttgtta 524
           |||||||||||||||||||||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 78  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                      
Query: 498 gcaggttcacctacggaaaccttgtta 524
           |||||||||||||||||||||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 78  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 498 gcaggttcacctacggaaaccttgtta 524
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-36.f
         (622 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   842   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   842   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   842   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   842   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   842   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69

                                                                       
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129

                                                                       
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189

                                                                       
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249

                                                                       
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309

                                                                       
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369

                                                                       
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429

                                     
Query: 499 tcttggttctcgcatcgatgaagaac 524
           ||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 499 tcttggttctcgcatcgatgaagaac 524
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67

                                                                       
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127

                                                                       
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187

                                                                       
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247

                                                                       
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307

                                                                       
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367

                                                                       
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427

                                     
Query: 499 tcttggttctcgcatcgatgaagaac 524
           ||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65

                                                                       
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125

                                                                       
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185

                                                                       
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245

                                                                       
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305

                                                                       
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365

                                                                       
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425

                                     
Query: 499 tcttggttctcgcatcgatgaagaac 524
           ||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 499 tcttggttctcgcatcgatgaagaac 524
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-37.f
         (642 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|4ABR|A  Chain A, Complex Of Smpb, A Tmrna Fragment And E...  1102   0.0  
pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1102   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1102   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1102   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1102   0.0  
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
           With The 70s Ribosome
          Length = 1522

 Score = 1102 bits (556), Expect = 0.0
 Identities = 559/560 (99%)
 Strand = Plus / Minus

                                                                       
Query: 81  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727

                                                                       
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667

                                                                       
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607

                                                                       
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547

                                                                       
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487

                                                                       
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427

                                                                       
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367

                                                                       
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307

                                                                       
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247

                               
Query: 621 tagctgatgggacgcgggcc 640
           ||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcc 227
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1102 bits (556), Expect = 0.0
 Identities = 559/560 (99%)
 Strand = Plus / Minus

                                                                       
Query: 81  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                               
Query: 621 tagctgatgggacgcgggcc 640
           ||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcc 222
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1102 bits (556), Expect = 0.0
 Identities = 559/560 (99%)
 Strand = Plus / Minus

                                                                       
Query: 81  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                               
Query: 621 tagctgatgggacgcgggcc 640
           ||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcc 222
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1102 bits (556), Expect = 0.0
 Identities = 559/560 (99%)
 Strand = Plus / Minus

                                                                       
Query: 81  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                               
Query: 621 tagctgatgggacgcgggcc 640
           ||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcc 222
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1102 bits (556), Expect = 0.0
 Identities = 559/560 (99%)
 Strand = Plus / Minus

                                                                       
Query: 81  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                               
Query: 621 tagctgatgggacgcgggcc 640
           ||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcc 222
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-38.f
         (649 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|4ABR|A  Chain A, Complex Of Smpb, A Tmrna Fragment And E...  1118   0.0  
pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
           With The 70s Ribosome
          Length = 1522

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247

                                       
Query: 619 tagctgatgggacgcgggcccatccgga 646
           ||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccgga 219
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 619 tagctgatgggacgcgggcccatccgga 646
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 619 tagctgatgggacgcgggcccatccgga 646
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 619 tagctgatgggacgcgggcccatccgga 646
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 619 tagctgatgggacgcgggcccatccgga 646
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-39.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1130   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1130   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1130   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1130   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1130   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1130 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Plus

                                                                       
Query: 79  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1130 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Plus

                                                                       
Query: 79  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1130 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Plus

                                                                       
Query: 79  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1130 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Plus

                                                                       
Query: 79  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1130 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Plus

                                                                       
Query: 79  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-40.f
         (649 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|4ABR|A  Chain A, Complex Of Smpb, A Tmrna Fragment And E...  1118   0.0  
pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
           With The 70s Ribosome
          Length = 1522

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccgga 219
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-41.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|4ABR|A  Chain A, Complex Of Smpb, A Tmrna Fragment And E...  1118   0.0  
pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
           With The 70s Ribosome
          Length = 1522

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccgga 219
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-42.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1130   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1130   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1130   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1130   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1130   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1130 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1130 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1130 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1130 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1130 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-43.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   846   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   846   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   846   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   846   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   846   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  846 bits (427), Expect = 0.0
 Identities = 441/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                       
Query: 500 gcaggttcacctacggaaaccttgttac 527
           ||||||||||||||||||||||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgttac 9

 Score =  242 bits (122), Expect = 3e-60
 Identities = 122/122 (100%)
 Strand = Plus / Minus

                                                                       
Query: 528 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 588 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 647
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

             
Query: 648 tg 649
           ||
Sbjct: 336 tg 335
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  846 bits (427), Expect = 0.0
 Identities = 441/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                       
Query: 500 gcaggttcacctacggaaaccttgttac 527
           ||||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgttac 8

 Score =  242 bits (122), Expect = 3e-60
 Identities = 122/122 (100%)
 Strand = Plus / Minus

                                                                       
Query: 528 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 588 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 647
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

             
Query: 648 tg 649
           ||
Sbjct: 335 tg 334
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  846 bits (427), Expect = 0.0
 Identities = 441/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                       
Query: 500 gcaggttcacctacggaaaccttgttac 527
           ||||||||||||||||||||||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgttac 7

 Score =  242 bits (122), Expect = 3e-60
 Identities = 122/122 (100%)
 Strand = Plus / Minus

                                                                       
Query: 528 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 588 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 647
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

             
Query: 648 tg 649
           ||
Sbjct: 334 tg 333
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  846 bits (427), Expect = 0.0
 Identities = 441/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                       
Query: 500 gcaggttcacctacggaaaccttgttac 527
           ||||||||||||||||||||||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgttac 5

 Score =  242 bits (122), Expect = 3e-60
 Identities = 122/122 (100%)
 Strand = Plus / Minus

                                                                       
Query: 528 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 588 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 647
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

             
Query: 648 tg 649
           ||
Sbjct: 332 tg 331
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  846 bits (427), Expect = 0.0
 Identities = 441/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                       
Query: 500 gcaggttcacctacggaaaccttgttac 527
           ||||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgttac 8

 Score =  242 bits (122), Expect = 3e-60
 Identities = 122/122 (100%)
 Strand = Plus / Minus

                                                                       
Query: 528 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 588 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 647
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

             
Query: 648 tg 649
           ||
Sbjct: 335 tg 334
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-44.f
         (649 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   837   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   837   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   837   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   837   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   837   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  837 bits (422), Expect = 0.0
 Identities = 439/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 439 ctcgtgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           ||| |||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  837 bits (422), Expect = 0.0
 Identities = 439/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 439 ctcgtgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           ||| |||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  837 bits (422), Expect = 0.0
 Identities = 439/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 439 ctcgtgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           ||| |||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  837 bits (422), Expect = 0.0
 Identities = 439/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 439 ctcgtgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           ||| |||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  837 bits (422), Expect = 0.0
 Identities = 439/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 439 ctcgtgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           ||| |||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-45.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   831   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   831   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   831   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   831   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   831   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  831 bits (419), Expect = 0.0
 Identities = 433/440 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 389

                                                                       
Query: 139 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 329

                                                                       
Query: 199 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 269

                                                                       
Query: 259 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 209

                                                                       
Query: 319 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 149

                                                                       
Query: 379 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 89

                                                                       
Query: 439 aaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttccgcaggttc 498
           |||||       ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  aaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttccgcaggttc 29

                               
Query: 499 acctacggaaaccttgttac 518
           ||||||||||||||||||||
Sbjct: 28  acctacggaaaccttgttac 9

 Score =  258 bits (130), Expect = 5e-65
 Identities = 130/130 (100%)
 Strand = Plus / Minus

                                                                       
Query: 519 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 578
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 579 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 638
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                     
Query: 639 tgtttgttac 648
           ||||||||||
Sbjct: 336 tgtttgttac 327
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  831 bits (419), Expect = 0.0
 Identities = 433/440 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 388

                                                                       
Query: 139 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 328

                                                                       
Query: 199 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 268

                                                                       
Query: 259 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 208

                                                                       
Query: 319 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 148

                                                                       
Query: 379 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 88

                                                                       
Query: 439 aaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttccgcaggttc 498
           |||||       ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  aaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttccgcaggttc 28

                               
Query: 499 acctacggaaaccttgttac 518
           ||||||||||||||||||||
Sbjct: 27  acctacggaaaccttgttac 8

 Score =  258 bits (130), Expect = 5e-65
 Identities = 130/130 (100%)
 Strand = Plus / Minus

                                                                       
Query: 519 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 578
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 579 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 638
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                     
Query: 639 tgtttgttac 648
           ||||||||||
Sbjct: 335 tgtttgttac 326
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  831 bits (419), Expect = 0.0
 Identities = 433/440 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 387

                                                                       
Query: 139 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 327

                                                                       
Query: 199 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 267

                                                                       
Query: 259 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 207

                                                                       
Query: 319 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 147

                                                                       
Query: 379 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 87

                                                                       
Query: 439 aaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttccgcaggttc 498
           |||||       ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  aaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttccgcaggttc 27

                               
Query: 499 acctacggaaaccttgttac 518
           ||||||||||||||||||||
Sbjct: 26  acctacggaaaccttgttac 7

 Score =  258 bits (130), Expect = 5e-65
 Identities = 130/130 (100%)
 Strand = Plus / Minus

                                                                       
Query: 519 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 578
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 579 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 638
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                     
Query: 639 tgtttgttac 648
           ||||||||||
Sbjct: 334 tgtttgttac 325
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  831 bits (419), Expect = 0.0
 Identities = 433/440 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 385

                                                                       
Query: 139 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 325

                                                                       
Query: 199 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 265

                                                                       
Query: 259 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 205

                                                                       
Query: 319 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 145

                                                                       
Query: 379 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 85

                                                                       
Query: 439 aaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttccgcaggttc 498
           |||||       ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  aaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttccgcaggttc 25

                               
Query: 499 acctacggaaaccttgttac 518
           ||||||||||||||||||||
Sbjct: 24  acctacggaaaccttgttac 5

 Score =  258 bits (130), Expect = 5e-65
 Identities = 130/130 (100%)
 Strand = Plus / Minus

                                                                       
Query: 519 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 578
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 579 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 638
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                     
Query: 639 tgtttgttac 648
           ||||||||||
Sbjct: 332 tgtttgttac 323
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  831 bits (419), Expect = 0.0
 Identities = 433/440 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 388

                                                                       
Query: 139 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 328

                                                                       
Query: 199 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 268

                                                                       
Query: 259 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 208

                                                                       
Query: 319 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 148

                                                                       
Query: 379 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 88

                                                                       
Query: 439 aaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttccgcaggttc 498
           |||||       ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  aaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttccgcaggttc 28

                               
Query: 499 acctacggaaaccttgttac 518
           ||||||||||||||||||||
Sbjct: 27  acctacggaaaccttgttac 8

 Score =  258 bits (130), Expect = 5e-65
 Identities = 130/130 (100%)
 Strand = Plus / Minus

                                                                       
Query: 519 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 578
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 579 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 638
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                     
Query: 639 tgtttgttac 648
           ||||||||||
Sbjct: 335 tgtttgttac 326
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-46.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   844   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   844   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   844   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   844   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   844   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-47.f
         (632 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   829   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   829   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   829   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   829   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   829   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  829 bits (418), Expect = 0.0
 Identities = 438/447 (97%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189

                                                                       
Query: 261 ttcttgctattccaaacggtgagaggtttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309

                                                                       
Query: 381 gcaatcggggcccagagataacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429

                                      
Query: 501 tcttggttctcgcatcgatgaagaacg 527
           |||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaacg 456

 Score =  163 bits (82), Expect = 2e-36
 Identities = 96/103 (93%)
 Strand = Plus / Plus

                                                                       
Query: 528 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 68

                                                      
Query: 588 aaaatggannnnnnngttttggcaagagcatgagagcttttac 630
           ||||||||       ||||||||||||||||||||||||||||
Sbjct: 69  aaaatggatttttttgttttggcaagagcatgagagcttttac 111
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  829 bits (418), Expect = 0.0
 Identities = 438/447 (97%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 261 ttcttgctattccaaacggtgagaggtttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 381 gcaatcggggcccagagataacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                      
Query: 501 tcttggttctcgcatcgatgaagaacg 527
           |||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaacg 455

 Score =  163 bits (82), Expect = 2e-36
 Identities = 96/103 (93%)
 Strand = Plus / Plus

                                                                       
Query: 528 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 67

                                                      
Query: 588 aaaatggannnnnnngttttggcaagagcatgagagcttttac 630
           ||||||||       ||||||||||||||||||||||||||||
Sbjct: 68  aaaatggatttttttgttttggcaagagcatgagagcttttac 110
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  829 bits (418), Expect = 0.0
 Identities = 438/447 (97%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187

                                                                       
Query: 261 ttcttgctattccaaacggtgagaggtttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307

                                                                       
Query: 381 gcaatcggggcccagagataacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427

                                      
Query: 501 tcttggttctcgcatcgatgaagaacg 527
           |||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaacg 454

 Score =  163 bits (82), Expect = 2e-36
 Identities = 96/103 (93%)
 Strand = Plus / Plus

                                                                       
Query: 528 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7   gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 66

                                                      
Query: 588 aaaatggannnnnnngttttggcaagagcatgagagcttttac 630
           ||||||||       ||||||||||||||||||||||||||||
Sbjct: 67  aaaatggatttttttgttttggcaagagcatgagagcttttac 109
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  829 bits (418), Expect = 0.0
 Identities = 438/447 (97%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185

                                                                       
Query: 261 ttcttgctattccaaacggtgagaggtttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305

                                                                       
Query: 381 gcaatcggggcccagagataacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425

                                      
Query: 501 tcttggttctcgcatcgatgaagaacg 527
           |||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaacg 452

 Score =  163 bits (82), Expect = 2e-36
 Identities = 96/103 (93%)
 Strand = Plus / Plus

                                                                       
Query: 528 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5   gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 64

                                                      
Query: 588 aaaatggannnnnnngttttggcaagagcatgagagcttttac 630
           ||||||||       ||||||||||||||||||||||||||||
Sbjct: 65  aaaatggatttttttgttttggcaagagcatgagagcttttac 107
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  829 bits (418), Expect = 0.0
 Identities = 438/447 (97%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 261 ttcttgctattccaaacggtgagaggtttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 381 gcaatcggggcccagagataacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                      
Query: 501 tcttggttctcgcatcgatgaagaacg 527
           |||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaacg 455

 Score =  163 bits (82), Expect = 2e-36
 Identities = 96/103 (93%)
 Strand = Plus / Plus

                                                                       
Query: 528 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 67

                                                      
Query: 588 aaaatggannnnnnngttttggcaagagcatgagagcttttac 630
           ||||||||       ||||||||||||||||||||||||||||
Sbjct: 68  aaaatggatttttttgttttggcaagagcatgagagcttttac 110
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-48.f
         (622 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   844   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   844   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   844   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   844   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   844   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 78  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                      
Query: 498 gcaggttcacctacggaaaccttgtta 524
           |||||||||||||||||||||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 78  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 498 gcaggttcacctacggaaaccttgtta 524
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 78  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                      
Query: 498 gcaggttcacctacggaaaccttgtta 524
           |||||||||||||||||||||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 78  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                      
Query: 498 gcaggttcacctacggaaaccttgtta 524
           |||||||||||||||||||||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 78  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 498 gcaggttcacctacggaaaccttgtta 524
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-49.f
         (633 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|4ABR|A  Chain A, Complex Of Smpb, A Tmrna Fragment And E...  1090   0.0  
pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1090   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1090   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1090   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1090   0.0  
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
           With The 70s Ribosome
          Length = 1522

 Score = 1090 bits (550), Expect = 0.0
 Identities = 553/554 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247

                         
Query: 619 tagctgatgggacg 632
           ||||||||||||||
Sbjct: 246 tagctgatgggacg 233
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1090 bits (550), Expect = 0.0
 Identities = 553/554 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                         
Query: 619 tagctgatgggacg 632
           ||||||||||||||
Sbjct: 241 tagctgatgggacg 228
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1090 bits (550), Expect = 0.0
 Identities = 553/554 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                         
Query: 619 tagctgatgggacg 632
           ||||||||||||||
Sbjct: 241 tagctgatgggacg 228
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1090 bits (550), Expect = 0.0
 Identities = 553/554 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                         
Query: 619 tagctgatgggacg 632
           ||||||||||||||
Sbjct: 241 tagctgatgggacg 228
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1090 bits (550), Expect = 0.0
 Identities = 553/554 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                         
Query: 619 tagctgatgggacg 632
           ||||||||||||||
Sbjct: 241 tagctgatgggacg 228
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-50.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1011   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1011   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1011   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1011   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1011   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1011 bits (510), Expect = 0.0
 Identities = 546/558 (97%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgactgagcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 499
           |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaaccccccacgaggggactgacggtacctgggtaataccgcctgcc 559
           ||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccttgccagcaaccgcggtaataccgacggcgcgagcgttacccggattcactggg 619
           |||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                             
Query: 620 cgtaaagggcgtgtaggc 637
           ||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggc 565
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1011 bits (510), Expect = 0.0
 Identities = 546/558 (97%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgactgagcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 499
           |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaaccccccacgaggggactgacggtacctgggtaataccgcctgcc 559
           ||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccttgccagcaaccgcggtaataccgacggcgcgagcgttacccggattcactggg 619
           |||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                             
Query: 620 cgtaaagggcgtgtaggc 637
           ||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggc 565
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1011 bits (510), Expect = 0.0
 Identities = 546/558 (97%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgactgagcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 499
           |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaaccccccacgaggggactgacggtacctgggtaataccgcctgcc 559
           ||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccttgccagcaaccgcggtaataccgacggcgcgagcgttacccggattcactggg 619
           |||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                             
Query: 620 cgtaaagggcgtgtaggc 637
           ||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggc 565
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1011 bits (510), Expect = 0.0
 Identities = 546/558 (97%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgactgagcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 499
           |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaaccccccacgaggggactgacggtacctgggtaataccgcctgcc 559
           ||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccttgccagcaaccgcggtaataccgacggcgcgagcgttacccggattcactggg 619
           |||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                             
Query: 620 cgtaaagggcgtgtaggc 637
           ||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggc 565
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1011 bits (510), Expect = 0.0
 Identities = 546/558 (97%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgactgagcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 499
           |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaaccccccacgaggggactgacggtacctgggtaataccgcctgcc 559
           ||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccttgccagcaaccgcggtaataccgacggcgcgagcgttacccggattcactggg 619
           |||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                             
Query: 620 cgtaaagggcgtgtaggc 637
           ||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggc 565
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-51.f
         (649 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1122   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1122   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1122   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1122   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1122   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1122 bits (566), Expect = 0.0
 Identities = 569/570 (99%)
 Strand = Plus / Plus

                                                                       
Query: 79  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1122 bits (566), Expect = 0.0
 Identities = 569/570 (99%)
 Strand = Plus / Plus

                                                                       
Query: 79  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1122 bits (566), Expect = 0.0
 Identities = 569/570 (99%)
 Strand = Plus / Plus

                                                                       
Query: 79  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1122 bits (566), Expect = 0.0
 Identities = 569/570 (99%)
 Strand = Plus / Plus

                                                                       
Query: 79  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1122 bits (566), Expect = 0.0
 Identities = 569/570 (99%)
 Strand = Plus / Plus

                                                                       
Query: 79  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-52.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1130   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1130   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1130   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1130   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1130   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1130 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1130 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1130 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1130 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1130 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-53.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1122   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1122   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1122   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1122   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1122   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1122 bits (566), Expect = 0.0
 Identities = 566/566 (100%)
 Strand = Plus / Plus

                                                                       
Query: 83  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                     
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
           ||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggg 573
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1122 bits (566), Expect = 0.0
 Identities = 566/566 (100%)
 Strand = Plus / Plus

                                                                       
Query: 83  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                     
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
           ||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggg 573
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1122 bits (566), Expect = 0.0
 Identities = 566/566 (100%)
 Strand = Plus / Plus

                                                                       
Query: 83  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                     
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
           ||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggg 573
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1122 bits (566), Expect = 0.0
 Identities = 566/566 (100%)
 Strand = Plus / Plus

                                                                       
Query: 83  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                     
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
           ||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggg 573
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1122 bits (566), Expect = 0.0
 Identities = 566/566 (100%)
 Strand = Plus / Plus

                                                                       
Query: 83  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                     
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
           ||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggg 573
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-54.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|4ABR|A  Chain A, Complex Of Smpb, A Tmrna Fragment And E...  1118   0.0  
pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
           With The 70s Ribosome
          Length = 1522

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccgga 219
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-55.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   842   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   842   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   842   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   842   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   842   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 82  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69

                                                                       
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129

                                                                       
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189

                                                                       
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249

                                                                       
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309

                                                                       
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369

                                                                       
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429

                                     
Query: 502 tcttggttctcgcatcgatgaagaac 527
           ||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 82  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 502 tcttggttctcgcatcgatgaagaac 527
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 82  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67

                                                                       
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127

                                                                       
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187

                                                                       
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247

                                                                       
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307

                                                                       
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367

                                                                       
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427

                                     
Query: 502 tcttggttctcgcatcgatgaagaac 527
           ||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 82  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65

                                                                       
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125

                                                                       
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185

                                                                       
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245

                                                                       
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305

                                                                       
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365

                                                                       
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425

                                     
Query: 502 tcttggttctcgcatcgatgaagaac 527
           ||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 82  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 502 tcttggttctcgcatcgatgaagaac 527
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-56.f
         (649 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   842   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   842   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   842   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   842   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   842   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429

                                     
Query: 500 tcttggttctcgcatcgatgaagaac 525
           ||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 500 tcttggttctcgcatcgatgaagaac 525
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427

                                     
Query: 500 tcttggttctcgcatcgatgaagaac 525
           ||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425

                                     
Query: 500 tcttggttctcgcatcgatgaagaac 525
           ||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 500 tcttggttctcgcatcgatgaagaac 525
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-57.f
         (645 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   842   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   842   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   842   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   842   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   842   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 77  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69

                                                                       
Query: 137 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 196
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129

                                                                       
Query: 197 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189

                                                                       
Query: 257 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249

                                                                       
Query: 317 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309

                                                                       
Query: 377 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369

                                                                       
Query: 437 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429

                                     
Query: 497 tcttggttctcgcatcgatgaagaac 522
           ||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 77  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 137 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 196
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 197 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 257 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 317 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 377 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 437 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 497 tcttggttctcgcatcgatgaagaac 522
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 77  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67

                                                                       
Query: 137 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 196
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127

                                                                       
Query: 197 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187

                                                                       
Query: 257 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247

                                                                       
Query: 317 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307

                                                                       
Query: 377 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367

                                                                       
Query: 437 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427

                                     
Query: 497 tcttggttctcgcatcgatgaagaac 522
           ||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 77  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65

                                                                       
Query: 137 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 196
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125

                                                                       
Query: 197 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185

                                                                       
Query: 257 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245

                                                                       
Query: 317 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305

                                                                       
Query: 377 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365

                                                                       
Query: 437 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425

                                     
Query: 497 tcttggttctcgcatcgatgaagaac 522
           ||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 77  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 137 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 196
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 197 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 257 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 317 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 377 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 437 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 497 tcttggttctcgcatcgatgaagaac 522
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-58.f
         (649 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   844   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   844   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   844   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   844   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   844   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 77  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 137 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 197 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 257 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 317 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 377 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 437 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 496
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                      
Query: 497 gcaggttcacctacggaaaccttgtta 523
           |||||||||||||||||||||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 77  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 137 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 197 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 257 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 317 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 377 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 437 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 496
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 497 gcaggttcacctacggaaaccttgtta 523
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 77  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 137 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 197 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 257 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 317 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 377 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 437 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 496
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                      
Query: 497 gcaggttcacctacggaaaccttgtta 523
           |||||||||||||||||||||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 77  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 137 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 197 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 257 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 317 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 377 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 437 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 496
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                      
Query: 497 gcaggttcacctacggaaaccttgtta 523
           |||||||||||||||||||||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 77  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 137 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 197 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 257 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 317 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 377 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 437 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 496
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 497 gcaggttcacctacggaaaccttgtta 523
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-59.f
         (641 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   844   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   844   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   844   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   844   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   844   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-60.f
         (627 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   844   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   844   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   844   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   844   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   844   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-61.f
         (642 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1092   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1092   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1092   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1092   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1092   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1092 bits (551), Expect = 0.0
 Identities = 554/555 (99%)
 Strand = Plus / Plus

                                                                       
Query: 86  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcgagtcgtgcgggc 145
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                          
Query: 626 cgtaaagggcgtgta 640
           |||||||||||||||
Sbjct: 548 cgtaaagggcgtgta 562
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1092 bits (551), Expect = 0.0
 Identities = 554/555 (99%)
 Strand = Plus / Plus

                                                                       
Query: 86  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcgagtcgtgcgggc 145
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                          
Query: 626 cgtaaagggcgtgta 640
           |||||||||||||||
Sbjct: 548 cgtaaagggcgtgta 562
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1092 bits (551), Expect = 0.0
 Identities = 554/555 (99%)
 Strand = Plus / Plus

                                                                       
Query: 86  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcgagtcgtgcgggc 145
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                          
Query: 626 cgtaaagggcgtgta 640
           |||||||||||||||
Sbjct: 548 cgtaaagggcgtgta 562
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1092 bits (551), Expect = 0.0
 Identities = 554/555 (99%)
 Strand = Plus / Plus

                                                                       
Query: 86  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcgagtcgtgcgggc 145
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                          
Query: 626 cgtaaagggcgtgta 640
           |||||||||||||||
Sbjct: 548 cgtaaagggcgtgta 562
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1092 bits (551), Expect = 0.0
 Identities = 554/555 (99%)
 Strand = Plus / Plus

                                                                       
Query: 86  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcgagtcgtgcgggc 145
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                          
Query: 626 cgtaaagggcgtgta 640
           |||||||||||||||
Sbjct: 548 cgtaaagggcgtgta 562
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-62.f
         (646 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|4ABR|A  Chain A, Complex Of Smpb, A Tmrna Fragment And E...  1114   0.0  
pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1114   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1114   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1114   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1114   0.0  
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
           With The 70s Ribosome
          Length = 1522

 Score = 1114 bits (562), Expect = 0.0
 Identities = 565/566 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247

                                     
Query: 619 tagctgatgggacgcgggcccatccg 644
           ||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccg 221
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1114 bits (562), Expect = 0.0
 Identities = 565/566 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                     
Query: 619 tagctgatgggacgcgggcccatccg 644
           ||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccg 216
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1114 bits (562), Expect = 0.0
 Identities = 565/566 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                     
Query: 619 tagctgatgggacgcgggcccatccg 644
           ||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccg 216
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1114 bits (562), Expect = 0.0
 Identities = 565/566 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                     
Query: 619 tagctgatgggacgcgggcccatccg 644
           ||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccg 216
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1114 bits (562), Expect = 0.0
 Identities = 565/566 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                     
Query: 619 tagctgatgggacgcgggcccatccg 644
           ||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccg 216
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-63.f
         (649 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|4ABR|A  Chain A, Complex Of Smpb, A Tmrna Fragment And E...  1118   0.0  
pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
           With The 70s Ribosome
          Length = 1522

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247

                                       
Query: 619 tagctgatgggacgcgggcccatccgga 646
           ||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccgga 219
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 619 tagctgatgggacgcgggcccatccgga 646
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 619 tagctgatgggacgcgggcccatccgga 646
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 619 tagctgatgggacgcgggcccatccgga 646
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 619 tagctgatgggacgcgggcccatccgga 646
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-64.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|4ABR|A  Chain A, Complex Of Smpb, A Tmrna Fragment And E...  1118   0.0  
pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
           With The 70s Ribosome
          Length = 1522

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccgga 219
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-65.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1116   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1116   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1116   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1116   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1116   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1116 bits (563), Expect = 0.0
 Identities = 563/563 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                  
Query: 621 cgtaaagggcgtgtaggcggcct 643
           |||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1116 bits (563), Expect = 0.0
 Identities = 563/563 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                  
Query: 621 cgtaaagggcgtgtaggcggcct 643
           |||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1116 bits (563), Expect = 0.0
 Identities = 563/563 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                  
Query: 621 cgtaaagggcgtgtaggcggcct 643
           |||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1116 bits (563), Expect = 0.0
 Identities = 563/563 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                  
Query: 621 cgtaaagggcgtgtaggcggcct 643
           |||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1116 bits (563), Expect = 0.0
 Identities = 563/563 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                  
Query: 621 cgtaaagggcgtgtaggcggcct 643
           |||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-66.f
         (649 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1120   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1120   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1120   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1120   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1120   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1120 bits (565), Expect = 0.0
 Identities = 568/569 (99%)
 Strand = Plus / Plus

                                                                       
Query: 79  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 438
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 619 cgtaaagggcgtgtaggcggcctggggcg 647
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1120 bits (565), Expect = 0.0
 Identities = 568/569 (99%)
 Strand = Plus / Plus

                                                                       
Query: 79  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 438
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 619 cgtaaagggcgtgtaggcggcctggggcg 647
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1120 bits (565), Expect = 0.0
 Identities = 568/569 (99%)
 Strand = Plus / Plus

                                                                       
Query: 79  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 438
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 619 cgtaaagggcgtgtaggcggcctggggcg 647
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1120 bits (565), Expect = 0.0
 Identities = 568/569 (99%)
 Strand = Plus / Plus

                                                                       
Query: 79  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 438
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 619 cgtaaagggcgtgtaggcggcctggggcg 647
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1120 bits (565), Expect = 0.0
 Identities = 568/569 (99%)
 Strand = Plus / Plus

                                                                       
Query: 79  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 438
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 619 cgtaaagggcgtgtaggcggcctggggcg 647
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-67.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   844   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   844   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   844   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   844   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   844   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 78  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                      
Query: 498 gcaggttcacctacggaaaccttgtta 524
           |||||||||||||||||||||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 78  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 498 gcaggttcacctacggaaaccttgtta 524
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 78  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                      
Query: 498 gcaggttcacctacggaaaccttgtta 524
           |||||||||||||||||||||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 78  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                      
Query: 498 gcaggttcacctacggaaaccttgtta 524
           |||||||||||||||||||||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 78  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 498 gcaggttcacctacggaaaccttgtta 524
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-68.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   835   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   835   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   835   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   835   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   835   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  835 bits (421), Expect = 0.0
 Identities = 438/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtctccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309

                                                                       
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429

                                     
Query: 501 tcttggttctcgcatcgatgaagaac 526
           ||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  835 bits (421), Expect = 0.0
 Identities = 438/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtctccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 501 tcttggttctcgcatcgatgaagaac 526
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  835 bits (421), Expect = 0.0
 Identities = 438/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtctccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307

                                                                       
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427

                                     
Query: 501 tcttggttctcgcatcgatgaagaac 526
           ||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  835 bits (421), Expect = 0.0
 Identities = 438/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtctccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305

                                                                       
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425

                                     
Query: 501 tcttggttctcgcatcgatgaagaac 526
           ||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  835 bits (421), Expect = 0.0
 Identities = 438/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtctccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 501 tcttggttctcgcatcgatgaagaac 526
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-69.f
         (648 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   842   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   842   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   842   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   842   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   842   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429

                                     
Query: 500 tcttggttctcgcatcgatgaagaac 525
           ||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 500 tcttggttctcgcatcgatgaagaac 525
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427

                                     
Query: 500 tcttggttctcgcatcgatgaagaac 525
           ||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425

                                     
Query: 500 tcttggttctcgcatcgatgaagaac 525
           ||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 500 tcttggttctcgcatcgatgaagaac 525
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-70.f
         (649 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   842   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   842   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   842   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   842   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   842   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309

                                                                       
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429

                                     
Query: 501 tcttggttctcgcatcgatgaagaac 526
           ||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 501 tcttggttctcgcatcgatgaagaac 526
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307

                                                                       
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427

                                     
Query: 501 tcttggttctcgcatcgatgaagaac 526
           ||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305

                                                                       
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425

                                     
Query: 501 tcttggttctcgcatcgatgaagaac 526
           ||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 501 tcttggttctcgcatcgatgaagaac 526
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-71.f
         (637 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   829   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   829   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   829   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   829   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   829   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  829 bits (418), Expect = 0.0
 Identities = 438/447 (97%)
 Strand = Plus / Minus

                                                                       
Query: 81  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 261 aaaactccacagtgtgttgtattgaaacggatttaattgtcctataacaaaagcacagaa 320
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                      
Query: 501 gcaggttcacctacggagaccttgtta 527
           ||||||||||||||||| |||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  829 bits (418), Expect = 0.0
 Identities = 438/447 (97%)
 Strand = Plus / Minus

                                                                       
Query: 81  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 261 aaaactccacagtgtgttgtattgaaacggatttaattgtcctataacaaaagcacagaa 320
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 501 gcaggttcacctacggagaccttgtta 527
           ||||||||||||||||| |||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  829 bits (418), Expect = 0.0
 Identities = 438/447 (97%)
 Strand = Plus / Minus

                                                                       
Query: 81  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 261 aaaactccacagtgtgttgtattgaaacggatttaattgtcctataacaaaagcacagaa 320
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                      
Query: 501 gcaggttcacctacggagaccttgtta 527
           ||||||||||||||||| |||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  829 bits (418), Expect = 0.0
 Identities = 438/447 (97%)
 Strand = Plus / Minus

                                                                       
Query: 81  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 261 aaaactccacagtgtgttgtattgaaacggatttaattgtcctataacaaaagcacagaa 320
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                      
Query: 501 gcaggttcacctacggagaccttgtta 527
           ||||||||||||||||| |||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  829 bits (418), Expect = 0.0
 Identities = 438/447 (97%)
 Strand = Plus / Minus

                                                                       
Query: 81  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 261 aaaactccacagtgtgttgtattgaaacggatttaattgtcctataacaaaagcacagaa 320
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 501 gcaggttcacctacggagaccttgtta 527
           ||||||||||||||||| |||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-72.f
         (624 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   844   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   844   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   844   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   844   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   844   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 76  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 136 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 196 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 256 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 316 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 376 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 436 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 495
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                      
Query: 496 gcaggttcacctacggaaaccttgtta 522
           |||||||||||||||||||||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 76  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 136 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 196 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 256 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 316 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 376 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 436 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 495
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 496 gcaggttcacctacggaaaccttgtta 522
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 76  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 136 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 196 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 256 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 316 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 376 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 436 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 495
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                      
Query: 496 gcaggttcacctacggaaaccttgtta 522
           |||||||||||||||||||||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 76  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 136 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 196 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 256 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 316 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 376 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 436 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 495
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                      
Query: 496 gcaggttcacctacggaaaccttgtta 522
           |||||||||||||||||||||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 76  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 136 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 196 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 256 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 316 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 376 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 436 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 495
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 496 gcaggttcacctacggaaaccttgtta 522
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-73.f
         (636 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|4ABR|A  Chain A, Complex Of Smpb, A Tmrna Fragment And E...  1084   0.0  
pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1084   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1084   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1084   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1084   0.0  
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
           With The 70s Ribosome
          Length = 1522

 Score = 1084 bits (547), Expect = 0.0
 Identities = 553/555 (99%)
 Strand = Plus / Minus

                                                                       
Query: 81  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727

                                                                       
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667

                                                                       
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607

                                                                       
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547

                                                                       
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487

                                                                       
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427

                                                                       
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367

                                                                       
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcaatgcccctgtgg 560
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307

                                                                       
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247

                          
Query: 621 tagctgatgggacgc 635
           |||||||||||||||
Sbjct: 246 tagctgatgggacgc 232
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1084 bits (547), Expect = 0.0
 Identities = 553/555 (99%)
 Strand = Plus / Minus

                                                                       
Query: 81  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcaatgcccctgtgg 560
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                          
Query: 621 tagctgatgggacgc 635
           |||||||||||||||
Sbjct: 241 tagctgatgggacgc 227
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1084 bits (547), Expect = 0.0
 Identities = 553/555 (99%)
 Strand = Plus / Minus

                                                                       
Query: 81  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcaatgcccctgtgg 560
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                          
Query: 621 tagctgatgggacgc 635
           |||||||||||||||
Sbjct: 241 tagctgatgggacgc 227
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1084 bits (547), Expect = 0.0
 Identities = 553/555 (99%)
 Strand = Plus / Minus

                                                                       
Query: 81  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcaatgcccctgtgg 560
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                          
Query: 621 tagctgatgggacgc 635
           |||||||||||||||
Sbjct: 241 tagctgatgggacgc 227
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1084 bits (547), Expect = 0.0
 Identities = 553/555 (99%)
 Strand = Plus / Minus

                                                                       
Query: 81  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcaatgcccctgtgg 560
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                          
Query: 621 tagctgatgggacgc 635
           |||||||||||||||
Sbjct: 241 tagctgatgggacgc 227
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-74.f
         (645 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|4ABR|A  Chain A, Complex Of Smpb, A Tmrna Fragment And E...  1114   0.0  
pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1114   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1114   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1114   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1114   0.0  
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
           With The 70s Ribosome
          Length = 1522

 Score = 1114 bits (562), Expect = 0.0
 Identities = 565/566 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247

                                     
Query: 620 tagctgatgggacgcgggcccatccg 645
           ||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccg 221
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1114 bits (562), Expect = 0.0
 Identities = 565/566 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                     
Query: 620 tagctgatgggacgcgggcccatccg 645
           ||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccg 216
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1114 bits (562), Expect = 0.0
 Identities = 565/566 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                     
Query: 620 tagctgatgggacgcgggcccatccg 645
           ||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccg 216
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1114 bits (562), Expect = 0.0
 Identities = 565/566 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                     
Query: 620 tagctgatgggacgcgggcccatccg 645
           ||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccg 216
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1114 bits (562), Expect = 0.0
 Identities = 565/566 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                     
Query: 620 tagctgatgggacgcgggcccatccg 645
           ||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccg 216
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-75.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 500
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                       
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
           ||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 500
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                       
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
           ||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 500
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                       
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
           ||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 500
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                       
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
           ||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 500
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                       
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
           ||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-76.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|4ABR|A  Chain A, Complex Of Smpb, A Tmrna Fragment And E...  1120   0.0  
pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1120   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1120   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1120   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1120   0.0  
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
           With The 70s Ribosome
          Length = 1522

 Score = 1120 bits (565), Expect = 0.0
 Identities = 568/569 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247

                                        
Query: 620 tagctgatgggacgcgggcccatccggaa 648
           |||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaa 218
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1120 bits (565), Expect = 0.0
 Identities = 568/569 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                        
Query: 620 tagctgatgggacgcgggcccatccggaa 648
           |||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaa 213
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1120 bits (565), Expect = 0.0
 Identities = 568/569 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                        
Query: 620 tagctgatgggacgcgggcccatccggaa 648
           |||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaa 213
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1120 bits (565), Expect = 0.0
 Identities = 568/569 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                        
Query: 620 tagctgatgggacgcgggcccatccggaa 648
           |||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaa 213
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1120 bits (565), Expect = 0.0
 Identities = 568/569 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                        
Query: 620 tagctgatgggacgcgggcccatccggaa 648
           |||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaa 213
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-77.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1120   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1120   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1120   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1120   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1120   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1120 bits (565), Expect = 0.0
 Identities = 568/569 (99%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1120 bits (565), Expect = 0.0
 Identities = 568/569 (99%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1120 bits (565), Expect = 0.0
 Identities = 568/569 (99%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1120 bits (565), Expect = 0.0
 Identities = 568/569 (99%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1120 bits (565), Expect = 0.0
 Identities = 568/569 (99%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-78.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|4ABR|A  Chain A, Complex Of Smpb, A Tmrna Fragment And E...  1118   0.0  
pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1118   0.0  
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
           With The 70s Ribosome
          Length = 1522

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccgga 219
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1118 bits (564), Expect = 0.0
 Identities = 567/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 620 tagctgatgggacgcgggcccatccgga 647
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-79.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   821   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   821   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   821   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   821   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   821   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  821 bits (414), Expect = 0.0
 Identities = 438/447 (97%), Gaps = 1/447 (0%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcgagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 70  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369

                                                                       
Query: 440 aaaaacaagaattttcgtaactgggaaattttaaaatattaaaaactttcaacaacggat 499
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaact-ggaaattttaaaatattaaaaactttcaacaacggat 428

                                      
Query: 500 ctcttggttctcgcatcgatgaagaac 526
           |||||||||||||||||||||||||||
Sbjct: 429 ctcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  821 bits (414), Expect = 0.0
 Identities = 438/447 (97%), Gaps = 1/447 (0%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcgagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 440 aaaaacaagaattttcgtaactgggaaattttaaaatattaaaaactttcaacaacggat 499
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaact-ggaaattttaaaatattaaaaactttcaacaacggat 427

                                      
Query: 500 ctcttggttctcgcatcgatgaagaac 526
           |||||||||||||||||||||||||||
Sbjct: 428 ctcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  821 bits (414), Expect = 0.0
 Identities = 438/447 (97%), Gaps = 1/447 (0%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcgagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 68  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367

                                                                       
Query: 440 aaaaacaagaattttcgtaactgggaaattttaaaatattaaaaactttcaacaacggat 499
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaact-ggaaattttaaaatattaaaaactttcaacaacggat 426

                                      
Query: 500 ctcttggttctcgcatcgatgaagaac 526
           |||||||||||||||||||||||||||
Sbjct: 427 ctcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  821 bits (414), Expect = 0.0
 Identities = 438/447 (97%), Gaps = 1/447 (0%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcgagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 66  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365

                                                                       
Query: 440 aaaaacaagaattttcgtaactgggaaattttaaaatattaaaaactttcaacaacggat 499
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaact-ggaaattttaaaatattaaaaactttcaacaacggat 424

                                      
Query: 500 ctcttggttctcgcatcgatgaagaac 526
           |||||||||||||||||||||||||||
Sbjct: 425 ctcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  821 bits (414), Expect = 0.0
 Identities = 438/447 (97%), Gaps = 1/447 (0%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcgagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 440 aaaaacaagaattttcgtaactgggaaattttaaaatattaaaaactttcaacaacggat 499
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaact-ggaaattttaaaatattaaaaactttcaacaacggat 427

                                      
Query: 500 ctcttggttctcgcatcgatgaagaac 526
           |||||||||||||||||||||||||||
Sbjct: 428 ctcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-80.f
         (647 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   842   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   842   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   842   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   842   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   842   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309

                                                                       
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429

                                     
Query: 501 tcttggttctcgcatcgatgaagaac 526
           ||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 501 tcttggttctcgcatcgatgaagaac 526
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307

                                                                       
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427

                                     
Query: 501 tcttggttctcgcatcgatgaagaac 526
           ||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305

                                                                       
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425

                                     
Query: 501 tcttggttctcgcatcgatgaagaac 526
           ||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 501 tcttggttctcgcatcgatgaagaac 526
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-81.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   829   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   829   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   829   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   829   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   829   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  829 bits (418), Expect = 0.0
 Identities = 438/447 (97%)
 Strand = Plus / Minus

                                                                       
Query: 82  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaactgtcctataacaaaagcacagaa 321
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                      
Query: 502 gcaggttcacctacggagaccttgtta 528
           ||||||||||||||||| |||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  829 bits (418), Expect = 0.0
 Identities = 438/447 (97%)
 Strand = Plus / Minus

                                                                       
Query: 82  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaactgtcctataacaaaagcacagaa 321
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 502 gcaggttcacctacggagaccttgtta 528
           ||||||||||||||||| |||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  829 bits (418), Expect = 0.0
 Identities = 438/447 (97%)
 Strand = Plus / Minus

                                                                       
Query: 82  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaactgtcctataacaaaagcacagaa 321
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                      
Query: 502 gcaggttcacctacggagaccttgtta 528
           ||||||||||||||||| |||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  829 bits (418), Expect = 0.0
 Identities = 438/447 (97%)
 Strand = Plus / Minus

                                                                       
Query: 82  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaactgtcctataacaaaagcacagaa 321
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                      
Query: 502 gcaggttcacctacggagaccttgtta 528
           ||||||||||||||||| |||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  829 bits (418), Expect = 0.0
 Identities = 438/447 (97%)
 Strand = Plus / Minus

                                                                       
Query: 82  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaactgtcctataacaaaagcacagaa 321
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 502 gcaggttcacctacggagaccttgtta 528
           ||||||||||||||||| |||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-82.f
         (640 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   842   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   842   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   842   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   842   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   842   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309

                                                                       
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429

                                     
Query: 501 tcttggttctcgcatcgatgaagaac 526
           ||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 501 tcttggttctcgcatcgatgaagaac 526
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307

                                                                       
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427

                                     
Query: 501 tcttggttctcgcatcgatgaagaac 526
           ||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305

                                                                       
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425

                                     
Query: 501 tcttggttctcgcatcgatgaagaac 526
           ||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 81  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 501 tcttggttctcgcatcgatgaagaac 526
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-83.f
         (626 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   844   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   844   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   844   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   844   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   844   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-84.f
         (625 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   835   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   835   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   835   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   835   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   835   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  835 bits (421), Expect = 0.0
 Identities = 438/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 78  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69

                                                                       
Query: 138 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 197
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129

                                                                       
Query: 198 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189

                                                                       
Query: 258 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249

                                                                       
Query: 318 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309

                                                                       
Query: 378 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369

                                                                       
Query: 438 aagaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 497
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429

                                     
Query: 498 tcttggttctcgcatcgatgaagaac 523
           ||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  835 bits (421), Expect = 0.0
 Identities = 438/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 78  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 138 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 197
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 198 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 258 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 318 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 378 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 438 aagaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 497
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 498 tcttggttctcgcatcgatgaagaac 523
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  835 bits (421), Expect = 0.0
 Identities = 438/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 78  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67

                                                                       
Query: 138 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 197
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127

                                                                       
Query: 198 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187

                                                                       
Query: 258 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247

                                                                       
Query: 318 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307

                                                                       
Query: 378 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367

                                                                       
Query: 438 aagaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 497
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427

                                     
Query: 498 tcttggttctcgcatcgatgaagaac 523
           ||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  835 bits (421), Expect = 0.0
 Identities = 438/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 78  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65

                                                                       
Query: 138 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 197
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125

                                                                       
Query: 198 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185

                                                                       
Query: 258 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245

                                                                       
Query: 318 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305

                                                                       
Query: 378 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365

                                                                       
Query: 438 aagaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 497
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425

                                     
Query: 498 tcttggttctcgcatcgatgaagaac 523
           ||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  835 bits (421), Expect = 0.0
 Identities = 438/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 78  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 138 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 197
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 198 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 258 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 318 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 378 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 438 aagaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 497
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 498 tcttggttctcgcatcgatgaagaac 523
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-85.f
         (635 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1092   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1092   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1092   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1092   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1092   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1092 bits (551), Expect = 0.0
 Identities = 551/551 (100%)
 Strand = Plus / Plus

                                                                       
Query: 82  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                      
Query: 622 cgtaaagggcg 632
           |||||||||||
Sbjct: 548 cgtaaagggcg 558
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1092 bits (551), Expect = 0.0
 Identities = 551/551 (100%)
 Strand = Plus / Plus

                                                                       
Query: 82  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                      
Query: 622 cgtaaagggcg 632
           |||||||||||
Sbjct: 548 cgtaaagggcg 558
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1092 bits (551), Expect = 0.0
 Identities = 551/551 (100%)
 Strand = Plus / Plus

                                                                       
Query: 82  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                      
Query: 622 cgtaaagggcg 632
           |||||||||||
Sbjct: 548 cgtaaagggcg 558
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1092 bits (551), Expect = 0.0
 Identities = 551/551 (100%)
 Strand = Plus / Plus

                                                                       
Query: 82  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                      
Query: 622 cgtaaagggcg 632
           |||||||||||
Sbjct: 548 cgtaaagggcg 558
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1092 bits (551), Expect = 0.0
 Identities = 551/551 (100%)
 Strand = Plus / Plus

                                                                       
Query: 82  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                      
Query: 622 cgtaaagggcg 632
           |||||||||||
Sbjct: 548 cgtaaagggcg 558
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-86.f
         (635 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1098   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1098   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1098   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1098   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1098   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1098 bits (554), Expect = 0.0
 Identities = 554/554 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                         
Query: 621 cgtaaagggcgtgt 634
           ||||||||||||||
Sbjct: 548 cgtaaagggcgtgt 561
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1098 bits (554), Expect = 0.0
 Identities = 554/554 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                         
Query: 621 cgtaaagggcgtgt 634
           ||||||||||||||
Sbjct: 548 cgtaaagggcgtgt 561
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1098 bits (554), Expect = 0.0
 Identities = 554/554 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                         
Query: 621 cgtaaagggcgtgt 634
           ||||||||||||||
Sbjct: 548 cgtaaagggcgtgt 561
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1098 bits (554), Expect = 0.0
 Identities = 554/554 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                         
Query: 621 cgtaaagggcgtgt 634
           ||||||||||||||
Sbjct: 548 cgtaaagggcgtgt 561
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1098 bits (554), Expect = 0.0
 Identities = 554/554 (100%)
 Strand = Plus / Plus

                                                                       
Query: 81  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                         
Query: 621 cgtaaagggcgtgt 634
           ||||||||||||||
Sbjct: 548 cgtaaagggcgtgt 561
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-87.f
         (648 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|4ABR|A  Chain A, Complex Of Smpb, A Tmrna Fragment And E...  1120   0.0  
pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1120   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1120   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1120   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1120   0.0  
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
           With The 70s Ribosome
          Length = 1522

 Score = 1120 bits (565), Expect = 0.0
 Identities = 568/569 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247

                                        
Query: 620 tagctgatgggacgcgggcccatccggaa 648
           |||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaa 218
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1120 bits (565), Expect = 0.0
 Identities = 568/569 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                        
Query: 620 tagctgatgggacgcgggcccatccggaa 648
           |||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaa 213
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1120 bits (565), Expect = 0.0
 Identities = 568/569 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                        
Query: 620 tagctgatgggacgcgggcccatccggaa 648
           |||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaa 213
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1120 bits (565), Expect = 0.0
 Identities = 568/569 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                        
Query: 620 tagctgatgggacgcgggcccatccggaa 648
           |||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaa 213
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1120 bits (565), Expect = 0.0
 Identities = 568/569 (99%)
 Strand = Plus / Minus

                                                                       
Query: 80  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                        
Query: 620 tagctgatgggacgcgggcccatccggaa 648
           |||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaa 213
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-88.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1130   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1130   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1130   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1130   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1130   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1130 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1130 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1130 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1130 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1130 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                         
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
           ||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-89.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|4ABR|A  Chain A, Complex Of Smpb, A Tmrna Fragment And E...  1122   0.0  
pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1122   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1122   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1122   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1122   0.0  
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
           With The 70s Ribosome
          Length = 1522

 Score = 1122 bits (566), Expect = 0.0
 Identities = 569/570 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247

                                         
Query: 619 tagctgatgggacgcgggcccatccggaag 648
           ||||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaag 217
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1122 bits (566), Expect = 0.0
 Identities = 569/570 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                         
Query: 619 tagctgatgggacgcgggcccatccggaag 648
           ||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaag 212
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1122 bits (566), Expect = 0.0
 Identities = 569/570 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                         
Query: 619 tagctgatgggacgcgggcccatccggaag 648
           ||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaag 212
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1122 bits (566), Expect = 0.0
 Identities = 569/570 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                         
Query: 619 tagctgatgggacgcgggcccatccggaag 648
           ||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaag 212
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1122 bits (566), Expect = 0.0
 Identities = 569/570 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                         
Query: 619 tagctgatgggacgcgggcccatccggaag 648
           ||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaag 212
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-90.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|4ABR|A  Chain A, Complex Of Smpb, A Tmrna Fragment And E...  1110   0.0  
pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1110   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1110   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1110   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1110   0.0  
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
           With The 70s Ribosome
          Length = 1522

 Score = 1110 bits (560), Expect = 0.0
 Identities = 566/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 81  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727

                                                                       
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667

                                                                       
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607

                                                                       
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547

                                                                       
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487

                                                                       
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427

                                                                       
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367

                                                                       
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307

                                                                       
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 620
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247

                                       
Query: 621 tagctgatgggacgcgggcccatccgga 648
           ||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccgga 219
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1110 bits (560), Expect = 0.0
 Identities = 566/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 81  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 620
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 621 tagctgatgggacgcgggcccatccgga 648
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1110 bits (560), Expect = 0.0
 Identities = 566/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 81  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 620
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 621 tagctgatgggacgcgggcccatccgga 648
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1110 bits (560), Expect = 0.0
 Identities = 566/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 81  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 620
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 621 tagctgatgggacgcgggcccatccgga 648
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1110 bits (560), Expect = 0.0
 Identities = 566/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 81  taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722

                                                                       
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662

                                                                       
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602

                                                                       
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542

                                                                       
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482

                                                                       
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422

                                                                       
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362

                                                                       
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302

                                                                       
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 620
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242

                                       
Query: 621 tagctgatgggacgcgggcccatccgga 648
           ||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-91.f
         (648 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   844   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   844   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   844   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   844   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   844   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 80  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 500 gcaggttcacctacggaaaccttgtta 526
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-92.f
         (647 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   835   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   835   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   835   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   835   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   835   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  835 bits (421), Expect = 0.0
 Identities = 438/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69

                                                                       
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129

                                                                       
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189

                                                                       
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249

                                                                       
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttccttgggcattcga 378
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309

                                                                       
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369

                                                                       
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429

                                     
Query: 499 tcttggttctcgcatcgatgaagaac 524
           ||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  835 bits (421), Expect = 0.0
 Identities = 438/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttccttgggcattcga 378
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 499 tcttggttctcgcatcgatgaagaac 524
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  835 bits (421), Expect = 0.0
 Identities = 438/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67

                                                                       
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127

                                                                       
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187

                                                                       
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247

                                                                       
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttccttgggcattcga 378
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307

                                                                       
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367

                                                                       
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427

                                     
Query: 499 tcttggttctcgcatcgatgaagaac 524
           ||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  835 bits (421), Expect = 0.0
 Identities = 438/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65

                                                                       
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125

                                                                       
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185

                                                                       
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245

                                                                       
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttccttgggcattcga 378
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305

                                                                       
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365

                                                                       
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425

                                     
Query: 499 tcttggttctcgcatcgatgaagaac 524
           ||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  835 bits (421), Expect = 0.0
 Identities = 438/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttccttgggcattcga 378
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 499 tcttggttctcgcatcgatgaagaac 524
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-93.f
         (634 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   841   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   841   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   841   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   841   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   841   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  841 bits (424), Expect = 0.0
 Identities = 438/445 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 70

                                                                       
Query: 139 aatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagaga 198
           ||||||       |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  aatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagaga 130

                                                                       
Query: 199 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 190

                                                                       
Query: 259 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 250

                                                                       
Query: 319 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 310

                                                                       
Query: 379 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 370

                                                                       
Query: 439 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 430

                                    
Query: 499 cttggttctcgcatcgatgaagaac 523
           |||||||||||||||||||||||||
Sbjct: 431 cttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  841 bits (424), Expect = 0.0
 Identities = 438/445 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 69

                                                                       
Query: 139 aatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagaga 198
           ||||||       |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagaga 129

                                                                       
Query: 199 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 189

                                                                       
Query: 259 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 249

                                                                       
Query: 319 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 309

                                                                       
Query: 379 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 369

                                                                       
Query: 439 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 429

                                    
Query: 499 cttggttctcgcatcgatgaagaac 523
           |||||||||||||||||||||||||
Sbjct: 430 cttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  841 bits (424), Expect = 0.0
 Identities = 438/445 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 68

                                                                       
Query: 139 aatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagaga 198
           ||||||       |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagaga 128

                                                                       
Query: 199 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 188

                                                                       
Query: 259 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 248

                                                                       
Query: 319 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 308

                                                                       
Query: 379 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 368

                                                                       
Query: 439 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 428

                                    
Query: 499 cttggttctcgcatcgatgaagaac 523
           |||||||||||||||||||||||||
Sbjct: 429 cttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  841 bits (424), Expect = 0.0
 Identities = 438/445 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7   aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 66

                                                                       
Query: 139 aatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagaga 198
           ||||||       |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  aatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagaga 126

                                                                       
Query: 199 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 186

                                                                       
Query: 259 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 246

                                                                       
Query: 319 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 306

                                                                       
Query: 379 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 366

                                                                       
Query: 439 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 426

                                    
Query: 499 cttggttctcgcatcgatgaagaac 523
           |||||||||||||||||||||||||
Sbjct: 427 cttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  841 bits (424), Expect = 0.0
 Identities = 438/445 (98%)
 Strand = Plus / Plus

                                                                       
Query: 79  aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 69

                                                                       
Query: 139 aatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagaga 198
           ||||||       |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagaga 129

                                                                       
Query: 199 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 189

                                                                       
Query: 259 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 249

                                                                       
Query: 319 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 309

                                                                       
Query: 379 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 369

                                                                       
Query: 439 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 429

                                    
Query: 499 cttggttctcgcatcgatgaagaac 523
           |||||||||||||||||||||||||
Sbjct: 430 cttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-94.f
         (640 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   844   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   844   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   844   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   844   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   844   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Plus

                                                                       
Query: 82  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69

                                                                       
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129

                                                                       
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189

                                                                       
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249

                                                                       
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309

                                                                       
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369

                                                                       
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429

                                      
Query: 502 tcttggttctcgcatcgatgaagaacg 528
           |||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaacg 456

 Score =  165 bits (83), Expect = 5e-37
 Identities = 97/104 (93%)
 Strand = Plus / Plus

                                                                       
Query: 529 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 68

                                                       
Query: 589 aaaatggannnnnnngttttggcaagagcatgagagcttttact 632
           ||||||||       |||||||||||||||||||||||||||||
Sbjct: 69  aaaatggatttttttgttttggcaagagcatgagagcttttact 112
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Plus

                                                                       
Query: 82  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                      
Query: 502 tcttggttctcgcatcgatgaagaacg 528
           |||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaacg 455

 Score =  165 bits (83), Expect = 5e-37
 Identities = 97/104 (93%)
 Strand = Plus / Plus

                                                                       
Query: 529 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 67

                                                       
Query: 589 aaaatggannnnnnngttttggcaagagcatgagagcttttact 632
           ||||||||       |||||||||||||||||||||||||||||
Sbjct: 68  aaaatggatttttttgttttggcaagagcatgagagcttttact 111
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Plus

                                                                       
Query: 82  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67

                                                                       
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127

                                                                       
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187

                                                                       
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247

                                                                       
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307

                                                                       
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367

                                                                       
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427

                                      
Query: 502 tcttggttctcgcatcgatgaagaacg 528
           |||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaacg 454

 Score =  165 bits (83), Expect = 5e-37
 Identities = 97/104 (93%)
 Strand = Plus / Plus

                                                                       
Query: 529 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7   gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 66

                                                       
Query: 589 aaaatggannnnnnngttttggcaagagcatgagagcttttact 632
           ||||||||       |||||||||||||||||||||||||||||
Sbjct: 67  aaaatggatttttttgttttggcaagagcatgagagcttttact 110
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Plus

                                                                       
Query: 82  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65

                                                                       
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125

                                                                       
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185

                                                                       
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245

                                                                       
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305

                                                                       
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365

                                                                       
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425

                                      
Query: 502 tcttggttctcgcatcgatgaagaacg 528
           |||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaacg 452

 Score =  165 bits (83), Expect = 5e-37
 Identities = 97/104 (93%)
 Strand = Plus / Plus

                                                                       
Query: 529 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5   gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 64

                                                       
Query: 589 aaaatggannnnnnngttttggcaagagcatgagagcttttact 632
           ||||||||       |||||||||||||||||||||||||||||
Sbjct: 65  aaaatggatttttttgttttggcaagagcatgagagcttttact 108
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Plus

                                                                       
Query: 82  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                      
Query: 502 tcttggttctcgcatcgatgaagaacg 528
           |||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaacg 455

 Score =  165 bits (83), Expect = 5e-37
 Identities = 97/104 (93%)
 Strand = Plus / Plus

                                                                       
Query: 529 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 67

                                                       
Query: 589 aaaatggannnnnnngttttggcaagagcatgagagcttttact 632
           ||||||||       |||||||||||||||||||||||||||||
Sbjct: 68  aaaatggatttttttgttttggcaagagcatgagagcttttact 111
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-95.f
         (633 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   842   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   842   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   842   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   842   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   842   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429

                                     
Query: 500 tcttggttctcgcatcgatgaagaac 525
           ||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 500 tcttggttctcgcatcgatgaagaac 525
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427

                                     
Query: 500 tcttggttctcgcatcgatgaagaac 525
           ||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425

                                     
Query: 500 tcttggttctcgcatcgatgaagaac 525
           ||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  842 bits (425), Expect = 0.0
 Identities = 439/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 80  taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68

                                                                       
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128

                                                                       
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188

                                                                       
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248

                                                                       
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308

                                                                       
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368

                                                                       
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428

                                     
Query: 500 tcttggttctcgcatcgatgaagaac 525
           ||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-96.f
         (628 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GU942435.1|  Uncultured eukaryote clone N709T_73 18S ribo...   844   0.0  
gb|GU942431.1|  Uncultured eukaryote clone N709T_66 18S ribo...   844   0.0  
gb|GU942402.1|  Uncultured eukaryote clone N707T_94 18S ribo...   844   0.0  
gb|GU942395.1|  Uncultured eukaryote clone N707T_85 18S ribo...   844   0.0  
gb|GU942361.1|  Uncultured eukaryote clone N707T_41 18S ribo...   844   0.0  
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 860

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97

                                                                       
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 36  gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 847

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1269

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95

                                                                       
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 34  gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1355

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93

                                                                       
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 32  gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, complete
           sequence; and 5.8S ribosomal RNA gene, partial sequence
          Length = 1134

 Score =  844 bits (426), Expect = 0.0
 Identities = 440/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 79  cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396

                                                                       
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336

                                                                       
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276

                                                                       
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216

                                                                       
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156

                                                                       
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96

                                                                       
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36

                                      
Query: 499 gcaggttcacctacggaaaccttgtta 525
           |||||||||||||||||||||||||||
Sbjct: 35  gcaggttcacctacggaaaccttgtta 9
  Database: /PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
    Posted date:  Apr 5, 2012  2:42 AM
  Number of letters in database: 40,680,653,861
  Number of sequences in database:  15,920,729
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 15920729
Number of Hits to DB: 6,840,616,829
Number of extensions: 1643078543
Number of successful extensions: 632079054
Number of sequences better than 10.0: 7695396
Number of HSP's gapped: 593292123
Number of HSP's successfully gapped: 391496259
Length of database: 40,680,653,861
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 13 (26.3 bits)
S2: 21 (42.1 bits)