BLASTN 2.2.20 [Feb-08-2009]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TST-16.f
         (650 letters)

Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt 
           15,920,729 sequences; 40,680,653,861 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|3UZM|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1128   0.0  
pdb|3UZL|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1128   0.0  
pdb|3UZI|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1128   0.0  
pdb|3UZG|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1128   0.0  
pdb|3UZ7|A  Chain A, Crystal Structure Analysis Of Ribosomal...  1128   0.0  
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1128 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex With Paromomycin
          Length = 1506

 Score = 1128 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1128 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The First
           70s Molecule In The Asymmetric Unit For The Near-Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1128 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
           Entry Contains The 30s Ribosomal Subunit Of The Second
           70s Molecule In The Asymmetric Unit For The Cognate
           Trna-Tyr Complex
          Length = 1506

 Score = 1128 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67

                                                                       
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127

                                                                       
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187

                                                                       
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247

                                                                       
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307

                                                                       
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367

                                                                       
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427

                                                                       
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487

                                                                       
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547

                                        
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
           |||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
BLAST Search Results