BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-30.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 729 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 729 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 729 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 729 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 729 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 80 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316
Query: 140 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256
Query: 200 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196
Query: 260 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136
Query: 320 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76
Query: 380 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16
Query: 440 ggatcaaa 447
||||||||
Sbjct: 15 ggatcaaa 8
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 80 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316
Query: 140 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256
Query: 200 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196
Query: 260 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136
Query: 320 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76
Query: 380 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16
Query: 440 ggatcaaa 447
||||||||
Sbjct: 15 ggatcaaa 8
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 80 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316
Query: 140 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256
Query: 200 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196
Query: 260 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136
Query: 320 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76
Query: 380 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16
Query: 440 ggatcaaa 447
||||||||
Sbjct: 15 ggatcaaa 8
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 80 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316
Query: 140 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256
Query: 200 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196
Query: 260 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136
Query: 320 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76
Query: 380 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16
Query: 440 ggatcaaa 447
||||||||
Sbjct: 15 ggatcaaa 8
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 80 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316
Query: 140 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256
Query: 200 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196
Query: 260 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136
Query: 320 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76
Query: 380 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16
Query: 440 ggatcaaa 447
||||||||
Sbjct: 15 ggatcaaa 8
BLAST Search Results