BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-01.f
(645 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And E... 1114 0.0
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1114 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1114 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1114 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1114 0.0
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 1522
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 620 tagctgatgggacgcgggcccatccg 645
||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccg 221
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccg 645
||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccg 216
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccg 645
||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccg 216
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccg 645
||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccg 216
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccg 645
||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccg 216
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-02.f
(649 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1128 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1128 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1128 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1128 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1128 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-03.f
(639 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1100 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1100 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1100 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1100 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1100 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1100 bits (555), Expect = 0.0
Identities = 555/555 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgta 635
|||||||||||||||
Sbjct: 548 cgtaaagggcgtgta 562
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1100 bits (555), Expect = 0.0
Identities = 555/555 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgta 635
|||||||||||||||
Sbjct: 548 cgtaaagggcgtgta 562
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1100 bits (555), Expect = 0.0
Identities = 555/555 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgta 635
|||||||||||||||
Sbjct: 548 cgtaaagggcgtgta 562
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1100 bits (555), Expect = 0.0
Identities = 555/555 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgta 635
|||||||||||||||
Sbjct: 548 cgtaaagggcgtgta 562
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1100 bits (555), Expect = 0.0
Identities = 555/555 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgta 635
|||||||||||||||
Sbjct: 548 cgtaaagggcgtgta 562
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-04.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1116 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1116 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1116 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1116 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1116 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-05.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1128 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1128 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1128 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1128 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1128 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-06.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And E... 1112 0.0
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1112 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1112 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1112 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1112 0.0
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 1522
Score = 1112 bits (561), Expect = 0.0
Identities = 567/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 260 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaa 218
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1112 bits (561), Expect = 0.0
Identities = 567/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaa 213
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1112 bits (561), Expect = 0.0
Identities = 567/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaa 213
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1112 bits (561), Expect = 0.0
Identities = 567/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaa 213
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1112 bits (561), Expect = 0.0
Identities = 567/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacgtgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaa 213
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-07.f
(631 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-08.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-09.f
(643 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 842 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 842 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 842 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 842 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 842 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 78 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 138 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 197
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 198 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 258 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 318 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 378 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 438 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 498 tcttggttctcgcatcgatgaagaac 523
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 78 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 138 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 197
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 198 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 258 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 318 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 378 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 438 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 498 tcttggttctcgcatcgatgaagaac 523
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 78 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 138 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 197
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 198 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 258 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 318 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 378 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 438 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 498 tcttggttctcgcatcgatgaagaac 523
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 78 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 138 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 197
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 198 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 258 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 318 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 378 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 438 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 498 tcttggttctcgcatcgatgaagaac 523
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 78 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 138 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 197
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 198 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 258 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 318 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 378 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 438 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 498 tcttggttctcgcatcgatgaagaac 523
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-10.f
(637 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-11.f
(632 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 261 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 501 gcaggttcacctacggaaaccttgtta 527
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-12.f
(619 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 839 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 839 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 839 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 839 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 839 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 839 bits (423), Expect = 0.0
Identities = 440/448 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 322 atctctcaccgtttggaatagcaagaaagagacttacaagcctagcaagaccgcgcactt 381
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 502 gcaggttcacctacggaaaccttgttac 529
||||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgttac 9
Score = 174 bits (88), Expect = 5e-40
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 529 catcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccag 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 catcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccag 390
Query: 589 ttacgaaaattcttgtttttgacaaaaa 616
||||||||||||||||||||||||||||
Sbjct: 389 ttacgaaaattcttgtttttgacaaaaa 362
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 839 bits (423), Expect = 0.0
Identities = 440/448 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 322 atctctcaccgtttggaatagcaagaaagagacttacaagcctagcaagaccgcgcactt 381
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 502 gcaggttcacctacggaaaccttgttac 529
||||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgttac 8
Score = 174 bits (88), Expect = 5e-40
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 529 catcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccag 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 catcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccag 389
Query: 589 ttacgaaaattcttgtttttgacaaaaa 616
||||||||||||||||||||||||||||
Sbjct: 388 ttacgaaaattcttgtttttgacaaaaa 361
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 839 bits (423), Expect = 0.0
Identities = 440/448 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 322 atctctcaccgtttggaatagcaagaaagagacttacaagcctagcaagaccgcgcactt 381
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 502 gcaggttcacctacggaaaccttgttac 529
||||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgttac 7
Score = 174 bits (88), Expect = 5e-40
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 529 catcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccag 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 catcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccag 388
Query: 589 ttacgaaaattcttgtttttgacaaaaa 616
||||||||||||||||||||||||||||
Sbjct: 387 ttacgaaaattcttgtttttgacaaaaa 360
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 839 bits (423), Expect = 0.0
Identities = 440/448 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 322 atctctcaccgtttggaatagcaagaaagagacttacaagcctagcaagaccgcgcactt 381
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 502 gcaggttcacctacggaaaccttgttac 529
||||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgttac 5
Score = 174 bits (88), Expect = 5e-40
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 529 catcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccag 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccag 386
Query: 589 ttacgaaaattcttgtttttgacaaaaa 616
||||||||||||||||||||||||||||
Sbjct: 385 ttacgaaaattcttgtttttgacaaaaa 358
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 839 bits (423), Expect = 0.0
Identities = 440/448 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 322 atctctcaccgtttggaatagcaagaaagagacttacaagcctagcaagaccgcgcactt 381
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 502 gcaggttcacctacggaaaccttgttac 529
||||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgttac 8
Score = 174 bits (88), Expect = 5e-40
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 529 catcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccag 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 catcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccag 389
Query: 589 ttacgaaaattcttgtttttgacaaaaa 616
||||||||||||||||||||||||||||
Sbjct: 388 ttacgaaaattcttgtttttgacaaaaa 361
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-13.f
(644 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1112 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1112 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1112 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1112 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1112 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1112 bits (561), Expect = 0.0
Identities = 561/561 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggc 642
|||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggc 568
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1112 bits (561), Expect = 0.0
Identities = 561/561 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggc 642
|||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggc 568
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1112 bits (561), Expect = 0.0
Identities = 561/561 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggc 642
|||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggc 568
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1112 bits (561), Expect = 0.0
Identities = 561/561 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggc 642
|||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggc 568
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1112 bits (561), Expect = 0.0
Identities = 561/561 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggc 642
|||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggc 568
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-14.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1126 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1126 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1126 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1126 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1126 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1126 bits (568), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1126 bits (568), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1126 bits (568), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1126 bits (568), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1126 bits (568), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-15.f
(643 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1102 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1102 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1102 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1102 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1102 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1102 bits (556), Expect = 0.0
Identities = 559/560 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcgg 641
||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcgg 567
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1102 bits (556), Expect = 0.0
Identities = 559/560 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcgg 641
||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcgg 567
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1102 bits (556), Expect = 0.0
Identities = 559/560 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcgg 641
||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcgg 567
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1102 bits (556), Expect = 0.0
Identities = 559/560 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcgg 641
||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcgg 567
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1102 bits (556), Expect = 0.0
Identities = 559/560 (99%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacgcgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcgg 641
||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcgg 567
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-16.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1128 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1128 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1128 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1128 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1128 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-17.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And E... 1102 0.0
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1102 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1102 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1102 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1102 0.0
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 1522
Score = 1102 bits (556), Expect = 0.0
Identities = 565/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 621 tagctgatggggcgcgggcccatccgga 648
||||||||||| ||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccgga 219
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1102 bits (556), Expect = 0.0
Identities = 565/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatggggcgcgggcccatccgga 648
||||||||||| ||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1102 bits (556), Expect = 0.0
Identities = 565/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatggggcgcgggcccatccgga 648
||||||||||| ||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1102 bits (556), Expect = 0.0
Identities = 565/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatggggcgcgggcccatccgga 648
||||||||||| ||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1102 bits (556), Expect = 0.0
Identities = 565/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatggggcgcgggcccatccgga 648
||||||||||| ||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-18.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And E... 1106 0.0
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1106 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1106 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1106 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1106 0.0
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 1522
Score = 1106 bits (558), Expect = 0.0
Identities = 567/570 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 319 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 378
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 499 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 619 tagctgatgggacgcgggcccatccggaag 648
||||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaag 217
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1106 bits (558), Expect = 0.0
Identities = 567/570 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 319 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 378
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 499 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 619 tagctgatgggacgcgggcccatccggaag 648
||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaag 212
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1106 bits (558), Expect = 0.0
Identities = 567/570 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 319 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 378
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 499 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 619 tagctgatgggacgcgggcccatccggaag 648
||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaag 212
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1106 bits (558), Expect = 0.0
Identities = 567/570 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 319 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 378
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 499 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 619 tagctgatgggacgcgggcccatccggaag 648
||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaag 212
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1106 bits (558), Expect = 0.0
Identities = 567/570 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 319 gaatccgggtaacgctcgtgccctccgtattaccgcggctgctggcacggagttggccgg 378
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 499 ggaagattcctaactgccgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 619 tagctgatgggacgcgggcccatccggaag 648
||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaag 212
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-19.f
(649 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 842 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 842 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 842 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 842 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 842 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 500 tcttggttctcgcatcgatgaagaac 525
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 500 tcttggttctcgcatcgatgaagaac 525
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 500 tcttggttctcgcatcgatgaagaac 525
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 500 tcttggttctcgcatcgatgaagaac 525
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 500 tcttggttctcgcatcgatgaagaac 525
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-20.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 644 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 644 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 644 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 644 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 644 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 644 bits (325), Expect = 0.0
Identities = 339/346 (97%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattc 426
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattc 355
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 644 bits (325), Expect = 0.0
Identities = 339/346 (97%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattc 426
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattc 354
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 644 bits (325), Expect = 0.0
Identities = 339/346 (97%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattc 426
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattc 353
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 644 bits (325), Expect = 0.0
Identities = 339/346 (97%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattc 426
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattc 351
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 644 bits (325), Expect = 0.0
Identities = 339/346 (97%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattc 426
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattc 354
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-21.f
(647 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-22.f
(639 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 842 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 842 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 842 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 842 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 842 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 499 tcttggttctcgcatcgatgaagaac 524
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 499 tcttggttctcgcatcgatgaagaac 524
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 499 tcttggttctcgcatcgatgaagaac 524
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 499 tcttggttctcgcatcgatgaagaac 524
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 499 tcttggttctcgcatcgatgaagaac 524
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-23.f
(634 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 846 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 846 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 846 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 846 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 846 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 502 gcaggttcacctacggaaaccttgttac 529
||||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgttac 9
Score = 204 bits (103), Expect = 6e-49
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 530 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 590 tttccagttacgaaaattcttgtttttgacaaaaatttaatga 632
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatga 354
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 502 gcaggttcacctacggaaaccttgttac 529
||||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgttac 8
Score = 204 bits (103), Expect = 6e-49
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 530 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 590 tttccagttacgaaaattcttgtttttgacaaaaatttaatga 632
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatga 353
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 502 gcaggttcacctacggaaaccttgttac 529
||||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgttac 7
Score = 204 bits (103), Expect = 6e-49
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 530 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 590 tttccagttacgaaaattcttgtttttgacaaaaatttaatga 632
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatga 352
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 502 gcaggttcacctacggaaaccttgttac 529
||||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgttac 5
Score = 204 bits (103), Expect = 6e-49
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 530 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 590 tttccagttacgaaaattcttgtttttgacaaaaatttaatga 632
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatga 350
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 502 gcaggttcacctacggaaaccttgttac 529
||||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgttac 8
Score = 204 bits (103), Expect = 6e-49
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 530 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 590 tttccagttacgaaaattcttgtttttgacaaaaatttaatga 632
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatga 353
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-24.f
(623 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-25.f
(630 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1082 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1082 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1082 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1082 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1082 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1082 bits (546), Expect = 0.0
Identities = 546/546 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaa 625
||||||
Sbjct: 548 cgtaaa 553
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1082 bits (546), Expect = 0.0
Identities = 546/546 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaa 625
||||||
Sbjct: 548 cgtaaa 553
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1082 bits (546), Expect = 0.0
Identities = 546/546 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaa 625
||||||
Sbjct: 548 cgtaaa 553
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1082 bits (546), Expect = 0.0
Identities = 546/546 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaa 625
||||||
Sbjct: 548 cgtaaa 553
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1082 bits (546), Expect = 0.0
Identities = 546/546 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaa 625
||||||
Sbjct: 548 cgtaaa 553
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-26.f
(649 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1126 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1126 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1126 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1126 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1126 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1126 bits (568), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggc 647
||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1126 bits (568), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggc 647
||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1126 bits (568), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggc 647
||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1126 bits (568), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggc 647
||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1126 bits (568), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggc 647
||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-27.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1124 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1124 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1124 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1124 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1124 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1124 bits (567), Expect = 0.0
Identities = 567/567 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctgggg 648
|||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctgggg 574
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1124 bits (567), Expect = 0.0
Identities = 567/567 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctgggg 648
|||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctgggg 574
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1124 bits (567), Expect = 0.0
Identities = 567/567 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctgggg 648
|||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctgggg 574
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1124 bits (567), Expect = 0.0
Identities = 567/567 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctgggg 648
|||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctgggg 574
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1124 bits (567), Expect = 0.0
Identities = 567/567 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcgtgtaggcggcctgggg 648
|||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctgggg 574
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-28.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1116 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1116 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1116 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1116 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1116 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-29.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1122 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1122 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1122 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1122 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1122 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1122 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggg 573
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1122 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggg 573
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1122 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggg 573
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1122 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggg 573
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1122 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggg 573
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-30.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 729 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 729 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 729 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 729 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 729 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 80 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316
Query: 140 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256
Query: 200 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196
Query: 260 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136
Query: 320 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76
Query: 380 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16
Query: 440 ggatcaaa 447
||||||||
Sbjct: 15 ggatcaaa 8
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 80 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316
Query: 140 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256
Query: 200 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196
Query: 260 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136
Query: 320 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76
Query: 380 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16
Query: 440 ggatcaaa 447
||||||||
Sbjct: 15 ggatcaaa 8
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 80 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316
Query: 140 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256
Query: 200 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196
Query: 260 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136
Query: 320 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76
Query: 380 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16
Query: 440 ggatcaaa 447
||||||||
Sbjct: 15 ggatcaaa 8
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 80 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316
Query: 140 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256
Query: 200 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196
Query: 260 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136
Query: 320 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76
Query: 380 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16
Query: 440 ggatcaaa 447
||||||||
Sbjct: 15 ggatcaaa 8
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 729 bits (368), Expect = 0.0
Identities = 368/368 (100%)
Strand = Plus / Minus
Query: 80 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgcgcccattgcggaagattcctaactgctgcctcccgtaggagtggggcccgtgtct 316
Query: 140 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtgcccctgtggccggccatcctctcagaccggctacccgtcgtcgccttggtgggcc 256
Query: 200 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccccaccaactagctgatgggacgcgggcccatccggaagcgggcaaagccctttg 196
Query: 260 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacacaccccaaggggcgggtccacatgggggattagcccgagtttccccgggttgtccc 136
Query: 320 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctcttccgggtaggtcacccacgcgttactcacccgtccgccgctgaccacggagtaaa 76
Query: 380 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 accccgcggcccgcacgacttgcatgtcttaggcacgccgccagcgttcaccctgagcca 16
Query: 440 ggatcaaa 447
||||||||
Sbjct: 15 ggatcaaa 8
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-31.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 846 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 846 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 846 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 846 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 846 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 78 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 498 gcaggttcacctacggaaaccttgttac 525
||||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgttac 9
Score = 244 bits (123), Expect = 7e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 526 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 586 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 646 tgt 648
|||
Sbjct: 336 tgt 334
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 78 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 498 gcaggttcacctacggaaaccttgttac 525
||||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgttac 8
Score = 244 bits (123), Expect = 7e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 526 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 586 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 646 tgt 648
|||
Sbjct: 335 tgt 333
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 78 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 498 gcaggttcacctacggaaaccttgttac 525
||||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgttac 7
Score = 244 bits (123), Expect = 7e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 526 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 586 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 646 tgt 648
|||
Sbjct: 334 tgt 332
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 78 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 498 gcaggttcacctacggaaaccttgttac 525
||||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgttac 5
Score = 244 bits (123), Expect = 7e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 526 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 586 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 646 tgt 648
|||
Sbjct: 332 tgt 330
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 78 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 498 gcaggttcacctacggaaaccttgttac 525
||||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgttac 8
Score = 244 bits (123), Expect = 7e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 526 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 586 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 646 tgt 648
|||
Sbjct: 335 tgt 333
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-32.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-33.f
(648 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 500 tcttggttctcgcatcgatgaagaacg 526
|||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaacg 456
Score = 196 bits (99), Expect = 1e-46
Identities = 113/120 (94%)
Strand = Plus / Plus
Query: 527 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 68
Query: 587 aaaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaaga 646
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaaga 128
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 500 tcttggttctcgcatcgatgaagaacg 526
|||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaacg 455
Score = 196 bits (99), Expect = 1e-46
Identities = 113/120 (94%)
Strand = Plus / Plus
Query: 527 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 67
Query: 587 aaaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaaga 646
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaaga 127
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 500 tcttggttctcgcatcgatgaagaacg 526
|||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaacg 454
Score = 196 bits (99), Expect = 1e-46
Identities = 113/120 (94%)
Strand = Plus / Plus
Query: 527 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 66
Query: 587 aaaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaaga 646
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 aaaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaaga 126
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 500 tcttggttctcgcatcgatgaagaacg 526
|||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaacg 452
Score = 196 bits (99), Expect = 1e-46
Identities = 113/120 (94%)
Strand = Plus / Plus
Query: 527 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 64
Query: 587 aaaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaaga 646
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 aaaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaaga 124
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 500 tcttggttctcgcatcgatgaagaacg 526
|||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaacg 455
Score = 196 bits (99), Expect = 1e-46
Identities = 113/120 (94%)
Strand = Plus / Plus
Query: 527 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 67
Query: 587 aaaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaaga 646
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaaga 127
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-34.f
(640 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 835 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 835 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 835 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 835 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 835 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 319 tttcaatacaacacactgtggagttttcatatcttcgcaactttttctttgggcattcga 378
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 499 tcttggttctcgcatcgatgaagaac 524
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 319 tttcaatacaacacactgtggagttttcatatcttcgcaactttttctttgggcattcga 378
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 499 tcttggttctcgcatcgatgaagaac 524
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 319 tttcaatacaacacactgtggagttttcatatcttcgcaactttttctttgggcattcga 378
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 499 tcttggttctcgcatcgatgaagaac 524
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 319 tttcaatacaacacactgtggagttttcatatcttcgcaactttttctttgggcattcga 378
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 499 tcttggttctcgcatcgatgaagaac 524
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 319 tttcaatacaacacactgtggagttttcatatcttcgcaactttttctttgggcattcga 378
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 499 tcttggttctcgcatcgatgaagaac 524
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-35.f
(636 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 78 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 498 gcaggttcacctacggaaaccttgtta 524
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 78 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 498 gcaggttcacctacggaaaccttgtta 524
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 78 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 498 gcaggttcacctacggaaaccttgtta 524
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 78 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 498 gcaggttcacctacggaaaccttgtta 524
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 78 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 498 gcaggttcacctacggaaaccttgtta 524
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-36.f
(622 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 842 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 842 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 842 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 842 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 842 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 499 tcttggttctcgcatcgatgaagaac 524
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 499 tcttggttctcgcatcgatgaagaac 524
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 499 tcttggttctcgcatcgatgaagaac 524
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 499 tcttggttctcgcatcgatgaagaac 524
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 499 tcttggttctcgcatcgatgaagaac 524
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-37.f
(642 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And E... 1102 0.0
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1102 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1102 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1102 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1102 0.0
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 1522
Score = 1102 bits (556), Expect = 0.0
Identities = 559/560 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 621 tagctgatgggacgcgggcc 640
||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcc 227
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1102 bits (556), Expect = 0.0
Identities = 559/560 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatgggacgcgggcc 640
||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcc 222
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1102 bits (556), Expect = 0.0
Identities = 559/560 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatgggacgcgggcc 640
||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcc 222
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1102 bits (556), Expect = 0.0
Identities = 559/560 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatgggacgcgggcc 640
||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcc 222
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1102 bits (556), Expect = 0.0
Identities = 559/560 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatgggacgcgggcc 640
||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcc 222
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-38.f
(649 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And E... 1118 0.0
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 1522
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 619 tagctgatgggacgcgggcccatccgga 646
||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccgga 219
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 619 tagctgatgggacgcgggcccatccgga 646
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 619 tagctgatgggacgcgggcccatccgga 646
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 619 tagctgatgggacgcgggcccatccgga 646
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 619 tagctgatgggacgcgggcccatccgga 646
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-39.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1130 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1130 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1130 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1130 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1130 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-40.f
(649 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And E... 1118 0.0
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 1522
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccgga 219
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-41.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And E... 1118 0.0
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 1522
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccgga 219
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-42.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1130 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1130 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1130 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1130 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1130 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-43.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 846 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 846 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 846 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 846 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 846 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 500 gcaggttcacctacggaaaccttgttac 527
||||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgttac 9
Score = 242 bits (122), Expect = 3e-60
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 528 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 588 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 648 tg 649
||
Sbjct: 336 tg 335
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 500 gcaggttcacctacggaaaccttgttac 527
||||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgttac 8
Score = 242 bits (122), Expect = 3e-60
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 528 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 588 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 648 tg 649
||
Sbjct: 335 tg 334
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 500 gcaggttcacctacggaaaccttgttac 527
||||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgttac 7
Score = 242 bits (122), Expect = 3e-60
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 528 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 588 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 648 tg 649
||
Sbjct: 334 tg 333
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 500 gcaggttcacctacggaaaccttgttac 527
||||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgttac 5
Score = 242 bits (122), Expect = 3e-60
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 528 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 588 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 648 tg 649
||
Sbjct: 332 tg 331
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 500 gcaggttcacctacggaaaccttgttac 527
||||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgttac 8
Score = 242 bits (122), Expect = 3e-60
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 528 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 588 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 648 tg 649
||
Sbjct: 335 tg 334
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-44.f
(649 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 837 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 837 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 837 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 837 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 837 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 837 bits (422), Expect = 0.0
Identities = 439/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 439 ctcgtgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 837 bits (422), Expect = 0.0
Identities = 439/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 439 ctcgtgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 837 bits (422), Expect = 0.0
Identities = 439/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 439 ctcgtgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 837 bits (422), Expect = 0.0
Identities = 439/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 439 ctcgtgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 837 bits (422), Expect = 0.0
Identities = 439/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 439 ctcgtgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-45.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 831 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 831 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 831 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 831 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 831 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 831 bits (419), Expect = 0.0
Identities = 433/440 (98%)
Strand = Plus / Minus
Query: 79 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 389
Query: 139 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 329
Query: 199 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 269
Query: 259 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 209
Query: 319 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 149
Query: 379 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 89
Query: 439 aaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttccgcaggttc 498
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 aaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttccgcaggttc 29
Query: 499 acctacggaaaccttgttac 518
||||||||||||||||||||
Sbjct: 28 acctacggaaaccttgttac 9
Score = 258 bits (130), Expect = 5e-65
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 519 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 579 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 639 tgtttgttac 648
||||||||||
Sbjct: 336 tgtttgttac 327
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 831 bits (419), Expect = 0.0
Identities = 433/440 (98%)
Strand = Plus / Minus
Query: 79 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 388
Query: 139 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 328
Query: 199 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 268
Query: 259 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 208
Query: 319 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 148
Query: 379 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 88
Query: 439 aaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttccgcaggttc 498
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 aaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttccgcaggttc 28
Query: 499 acctacggaaaccttgttac 518
||||||||||||||||||||
Sbjct: 27 acctacggaaaccttgttac 8
Score = 258 bits (130), Expect = 5e-65
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 519 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 579 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 639 tgtttgttac 648
||||||||||
Sbjct: 335 tgtttgttac 326
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 831 bits (419), Expect = 0.0
Identities = 433/440 (98%)
Strand = Plus / Minus
Query: 79 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 387
Query: 139 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 327
Query: 199 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 267
Query: 259 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 207
Query: 319 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 147
Query: 379 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 87
Query: 439 aaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttccgcaggttc 498
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 aaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttccgcaggttc 27
Query: 499 acctacggaaaccttgttac 518
||||||||||||||||||||
Sbjct: 26 acctacggaaaccttgttac 7
Score = 258 bits (130), Expect = 5e-65
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 519 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 579 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 639 tgtttgttac 648
||||||||||
Sbjct: 334 tgtttgttac 325
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 831 bits (419), Expect = 0.0
Identities = 433/440 (98%)
Strand = Plus / Minus
Query: 79 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 385
Query: 139 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 325
Query: 199 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 265
Query: 259 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 205
Query: 319 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 145
Query: 379 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 85
Query: 439 aaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttccgcaggttc 498
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 aaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttccgcaggttc 25
Query: 499 acctacggaaaccttgttac 518
||||||||||||||||||||
Sbjct: 24 acctacggaaaccttgttac 5
Score = 258 bits (130), Expect = 5e-65
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 519 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 579 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 639 tgtttgttac 648
||||||||||
Sbjct: 332 tgtttgttac 323
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 831 bits (419), Expect = 0.0
Identities = 433/440 (98%)
Strand = Plus / Minus
Query: 79 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaatttccagt 388
Query: 139 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttgtgtttgtt 328
Query: 199 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 acctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatgaaaactcc 268
Query: 259 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 acagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaaatctctca 208
Query: 319 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcacttaagcgcag 148
Query: 379 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 gcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatgctcttgcc 88
Query: 439 aaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttccgcaggttc 498
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 aaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttccgcaggttc 28
Query: 499 acctacggaaaccttgttac 518
||||||||||||||||||||
Sbjct: 27 acctacggaaaccttgttac 8
Score = 258 bits (130), Expect = 5e-65
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 519 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 579 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 639 tgtttgttac 648
||||||||||
Sbjct: 335 tgtttgttac 326
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-46.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-47.f
(632 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 829 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 829 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 829 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 829 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 829 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 261 ttcttgctattccaaacggtgagaggtttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 381 gcaatcggggcccagagataacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 501 tcttggttctcgcatcgatgaagaacg 527
|||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaacg 456
Score = 163 bits (82), Expect = 2e-36
Identities = 96/103 (93%)
Strand = Plus / Plus
Query: 528 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 68
Query: 588 aaaatggannnnnnngttttggcaagagcatgagagcttttac 630
|||||||| ||||||||||||||||||||||||||||
Sbjct: 69 aaaatggatttttttgttttggcaagagcatgagagcttttac 111
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 261 ttcttgctattccaaacggtgagaggtttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 381 gcaatcggggcccagagataacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 501 tcttggttctcgcatcgatgaagaacg 527
|||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaacg 455
Score = 163 bits (82), Expect = 2e-36
Identities = 96/103 (93%)
Strand = Plus / Plus
Query: 528 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 67
Query: 588 aaaatggannnnnnngttttggcaagagcatgagagcttttac 630
|||||||| ||||||||||||||||||||||||||||
Sbjct: 68 aaaatggatttttttgttttggcaagagcatgagagcttttac 110
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 261 ttcttgctattccaaacggtgagaggtttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 381 gcaatcggggcccagagataacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 501 tcttggttctcgcatcgatgaagaacg 527
|||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaacg 454
Score = 163 bits (82), Expect = 2e-36
Identities = 96/103 (93%)
Strand = Plus / Plus
Query: 528 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 66
Query: 588 aaaatggannnnnnngttttggcaagagcatgagagcttttac 630
|||||||| ||||||||||||||||||||||||||||
Sbjct: 67 aaaatggatttttttgttttggcaagagcatgagagcttttac 109
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 261 ttcttgctattccaaacggtgagaggtttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 381 gcaatcggggcccagagataacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 501 tcttggttctcgcatcgatgaagaacg 527
|||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaacg 452
Score = 163 bits (82), Expect = 2e-36
Identities = 96/103 (93%)
Strand = Plus / Plus
Query: 528 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 64
Query: 588 aaaatggannnnnnngttttggcaagagcatgagagcttttac 630
|||||||| ||||||||||||||||||||||||||||
Sbjct: 65 aaaatggatttttttgttttggcaagagcatgagagcttttac 107
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 261 ttcttgctattccaaacggtgagaggtttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 381 gcaatcggggcccagagataacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 501 tcttggttctcgcatcgatgaagaacg 527
|||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaacg 455
Score = 163 bits (82), Expect = 2e-36
Identities = 96/103 (93%)
Strand = Plus / Plus
Query: 528 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 67
Query: 588 aaaatggannnnnnngttttggcaagagcatgagagcttttac 630
|||||||| ||||||||||||||||||||||||||||
Sbjct: 68 aaaatggatttttttgttttggcaagagcatgagagcttttac 110
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-48.f
(622 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 78 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 498 gcaggttcacctacggaaaccttgtta 524
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 78 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 498 gcaggttcacctacggaaaccttgtta 524
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 78 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 498 gcaggttcacctacggaaaccttgtta 524
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 78 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 498 gcaggttcacctacggaaaccttgtta 524
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 78 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 498 gcaggttcacctacggaaaccttgtta 524
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-49.f
(633 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And E... 1090 0.0
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1090 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1090 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1090 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1090 0.0
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 1522
Score = 1090 bits (550), Expect = 0.0
Identities = 553/554 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 619 tagctgatgggacg 632
||||||||||||||
Sbjct: 246 tagctgatgggacg 233
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1090 bits (550), Expect = 0.0
Identities = 553/554 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 619 tagctgatgggacg 632
||||||||||||||
Sbjct: 241 tagctgatgggacg 228
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1090 bits (550), Expect = 0.0
Identities = 553/554 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 619 tagctgatgggacg 632
||||||||||||||
Sbjct: 241 tagctgatgggacg 228
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1090 bits (550), Expect = 0.0
Identities = 553/554 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 619 tagctgatgggacg 632
||||||||||||||
Sbjct: 241 tagctgatgggacg 228
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1090 bits (550), Expect = 0.0
Identities = 553/554 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 619 tagctgatgggacg 632
||||||||||||||
Sbjct: 241 tagctgatgggacg 228
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-50.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1011 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1011 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1011 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1011 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1011 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1011 bits (510), Expect = 0.0
Identities = 546/558 (97%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgactgagcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 499
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaaccccccacgaggggactgacggtacctgggtaataccgcctgcc 559
||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccttgccagcaaccgcggtaataccgacggcgcgagcgttacccggattcactggg 619
|||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggc 637
||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggc 565
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1011 bits (510), Expect = 0.0
Identities = 546/558 (97%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgactgagcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 499
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaaccccccacgaggggactgacggtacctgggtaataccgcctgcc 559
||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccttgccagcaaccgcggtaataccgacggcgcgagcgttacccggattcactggg 619
|||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggc 637
||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggc 565
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1011 bits (510), Expect = 0.0
Identities = 546/558 (97%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgactgagcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 499
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaaccccccacgaggggactgacggtacctgggtaataccgcctgcc 559
||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccttgccagcaaccgcggtaataccgacggcgcgagcgttacccggattcactggg 619
|||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggc 637
||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggc 565
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1011 bits (510), Expect = 0.0
Identities = 546/558 (97%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgactgagcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 499
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaaccccccacgaggggactgacggtacctgggtaataccgcctgcc 559
||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccttgccagcaaccgcggtaataccgacggcgcgagcgttacccggattcactggg 619
|||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggc 637
||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggc 565
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1011 bits (510), Expect = 0.0
Identities = 546/558 (97%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcatcacttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgactgagcgaccccgcttggaggaagaagcccttcggggtgtaaactcc 499
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaaccccccacgaggggactgacggtacctgggtaataccgcctgcc 559
||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccttgccagcaaccgcggtaataccgacggcgcgagcgttacccggattcactggg 619
|||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggc 637
||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggc 565
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-51.f
(649 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1122 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1122 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1122 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1122 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1122 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1122 bits (566), Expect = 0.0
Identities = 569/570 (99%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1122 bits (566), Expect = 0.0
Identities = 569/570 (99%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1122 bits (566), Expect = 0.0
Identities = 569/570 (99%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1122 bits (566), Expect = 0.0
Identities = 569/570 (99%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1122 bits (566), Expect = 0.0
Identities = 569/570 (99%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgctggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 619 cgtaaagggcgtgtaggcggcctggggcgt 648
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-52.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1130 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1130 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1130 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1130 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1130 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-53.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1122 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1122 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1122 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1122 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1122 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1122 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggg 573
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1122 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggg 573
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1122 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggg 573
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1122 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggg 573
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1122 bits (566), Expect = 0.0
Identities = 566/566 (100%)
Strand = Plus / Plus
Query: 83 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 143 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 203 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 263 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 323 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 383 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 443 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 503 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 563 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 623 cgtaaagggcgtgtaggcggcctggg 648
||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggg 573
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-54.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And E... 1118 0.0
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 1522
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccgga 219
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-55.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 842 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 842 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 842 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 842 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 842 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 502 tcttggttctcgcatcgatgaagaac 527
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 502 tcttggttctcgcatcgatgaagaac 527
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 502 tcttggttctcgcatcgatgaagaac 527
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 502 tcttggttctcgcatcgatgaagaac 527
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 502 tcttggttctcgcatcgatgaagaac 527
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-56.f
(649 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 842 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 842 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 842 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 842 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 842 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 500 tcttggttctcgcatcgatgaagaac 525
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 500 tcttggttctcgcatcgatgaagaac 525
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 500 tcttggttctcgcatcgatgaagaac 525
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 500 tcttggttctcgcatcgatgaagaac 525
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 500 tcttggttctcgcatcgatgaagaac 525
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-57.f
(645 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 842 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 842 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 842 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 842 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 842 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 77 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 137 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 196
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 197 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 257 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 317 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 377 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 437 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 497 tcttggttctcgcatcgatgaagaac 522
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 77 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 137 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 196
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 197 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 257 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 317 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 377 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 437 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 497 tcttggttctcgcatcgatgaagaac 522
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 77 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 137 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 196
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 197 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 257 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 317 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 377 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 437 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 497 tcttggttctcgcatcgatgaagaac 522
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 77 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 137 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 196
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 197 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 257 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 317 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 377 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 437 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 497 tcttggttctcgcatcgatgaagaac 522
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 77 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 137 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 196
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 197 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 257 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 317 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 377 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 437 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 497 tcttggttctcgcatcgatgaagaac 522
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-58.f
(649 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 77 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 137 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 197 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 257 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 317 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 377 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 437 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 496
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 497 gcaggttcacctacggaaaccttgtta 523
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 77 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 137 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 197 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 257 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 317 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 377 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 437 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 496
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 497 gcaggttcacctacggaaaccttgtta 523
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 77 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 137 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 197 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 257 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 317 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 377 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 437 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 496
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 497 gcaggttcacctacggaaaccttgtta 523
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 77 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 137 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 197 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 257 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 317 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 377 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 437 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 496
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 497 gcaggttcacctacggaaaccttgtta 523
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 77 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 137 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 197 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 257 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 317 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 377 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 437 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 496
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 497 gcaggttcacctacggaaaccttgtta 523
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-59.f
(641 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-60.f
(627 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-61.f
(642 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1092 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1092 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1092 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1092 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1092 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1092 bits (551), Expect = 0.0
Identities = 554/555 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcgagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 626 cgtaaagggcgtgta 640
|||||||||||||||
Sbjct: 548 cgtaaagggcgtgta 562
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1092 bits (551), Expect = 0.0
Identities = 554/555 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcgagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 626 cgtaaagggcgtgta 640
|||||||||||||||
Sbjct: 548 cgtaaagggcgtgta 562
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1092 bits (551), Expect = 0.0
Identities = 554/555 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcgagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 626 cgtaaagggcgtgta 640
|||||||||||||||
Sbjct: 548 cgtaaagggcgtgta 562
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1092 bits (551), Expect = 0.0
Identities = 554/555 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcgagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 626 cgtaaagggcgtgta 640
|||||||||||||||
Sbjct: 548 cgtaaagggcgtgta 562
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1092 bits (551), Expect = 0.0
Identities = 554/555 (99%)
Strand = Plus / Plus
Query: 86 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcgagtcgtgcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 146 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 206 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 266 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 326 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 386 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 446 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 506 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 566 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 626 cgtaaagggcgtgta 640
|||||||||||||||
Sbjct: 548 cgtaaagggcgtgta 562
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-62.f
(646 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And E... 1114 0.0
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1114 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1114 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1114 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1114 0.0
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 1522
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 619 tagctgatgggacgcgggcccatccg 644
||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccg 221
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 619 tagctgatgggacgcgggcccatccg 644
||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccg 216
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 619 tagctgatgggacgcgggcccatccg 644
||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccg 216
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 619 tagctgatgggacgcgggcccatccg 644
||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccg 216
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 619 tagctgatgggacgcgggcccatccg 644
||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccg 216
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-63.f
(649 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And E... 1118 0.0
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 1522
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 619 tagctgatgggacgcgggcccatccgga 646
||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccgga 219
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 619 tagctgatgggacgcgggcccatccgga 646
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 619 tagctgatgggacgcgggcccatccgga 646
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 619 tagctgatgggacgcgggcccatccgga 646
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 619 tagctgatgggacgcgggcccatccgga 646
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-64.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And E... 1118 0.0
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 1522
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccgga 219
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-65.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1116 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1116 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1116 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1116 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1116 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcct 643
|||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcct 570
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-66.f
(649 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1120 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1120 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1120 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1120 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1120 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 619 cgtaaagggcgtgtaggcggcctggggcg 647
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 619 cgtaaagggcgtgtaggcggcctggggcg 647
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 619 cgtaaagggcgtgtaggcggcctggggcg 647
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 619 cgtaaagggcgtgtaggcggcctggggcg 647
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Plus
Query: 79 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 139 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 199 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 259 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 319 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 379 gggcactgagacacgggccccactcctacgggaggcagcggttaggaatcttccgcaatg 438
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 439 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 499 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 559 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 619 cgtaaagggcgtgtaggcggcctggggcg 647
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-67.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 78 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 498 gcaggttcacctacggaaaccttgtta 524
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 78 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 498 gcaggttcacctacggaaaccttgtta 524
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 78 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 498 gcaggttcacctacggaaaccttgtta 524
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 78 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 498 gcaggttcacctacggaaaccttgtta 524
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 78 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 138 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 198 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 258 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 318 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 378 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 438 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 497
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 498 gcaggttcacctacggaaaccttgtta 524
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-68.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 835 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 835 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 835 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 835 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 835 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtctccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtctccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtctccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtctccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtctccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-69.f
(648 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 842 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 842 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 842 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 842 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 842 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 500 tcttggttctcgcatcgatgaagaac 525
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 500 tcttggttctcgcatcgatgaagaac 525
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 500 tcttggttctcgcatcgatgaagaac 525
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 500 tcttggttctcgcatcgatgaagaac 525
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 500 tcttggttctcgcatcgatgaagaac 525
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-70.f
(649 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 842 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 842 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 842 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 842 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 842 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-71.f
(637 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 829 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 829 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 829 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 829 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 829 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 261 aaaactccacagtgtgttgtattgaaacggatttaattgtcctataacaaaagcacagaa 320
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 501 gcaggttcacctacggagaccttgtta 527
||||||||||||||||| |||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 261 aaaactccacagtgtgttgtattgaaacggatttaattgtcctataacaaaagcacagaa 320
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 501 gcaggttcacctacggagaccttgtta 527
||||||||||||||||| |||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 261 aaaactccacagtgtgttgtattgaaacggatttaattgtcctataacaaaagcacagaa 320
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 501 gcaggttcacctacggagaccttgtta 527
||||||||||||||||| |||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 261 aaaactccacagtgtgttgtattgaaacggatttaattgtcctataacaaaagcacagaa 320
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 501 gcaggttcacctacggagaccttgtta 527
||||||||||||||||| |||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Minus
Query: 81 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 141 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 201 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 261 aaaactccacagtgtgttgtattgaaacggatttaattgtcctataacaaaagcacagaa 320
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 321 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 381 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 441 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 500
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 501 gcaggttcacctacggagaccttgtta 527
||||||||||||||||| |||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-72.f
(624 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 76 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 136 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 196 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 256 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 316 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 376 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 436 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 495
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 496 gcaggttcacctacggaaaccttgtta 522
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 76 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 136 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 196 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 256 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 316 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 376 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 436 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 495
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 496 gcaggttcacctacggaaaccttgtta 522
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 76 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 136 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 196 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 256 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 316 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 376 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 436 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 495
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 496 gcaggttcacctacggaaaccttgtta 522
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 76 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 136 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 196 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 256 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 316 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 376 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 436 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 495
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 496 gcaggttcacctacggaaaccttgtta 522
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 76 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 136 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 196 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 256 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 316 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 376 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 436 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 495
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 496 gcaggttcacctacggaaaccttgtta 522
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-73.f
(636 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And E... 1084 0.0
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1084 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1084 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1084 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1084 0.0
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 1522
Score = 1084 bits (547), Expect = 0.0
Identities = 553/555 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcaatgcccctgtgg 560
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 621 tagctgatgggacgc 635
|||||||||||||||
Sbjct: 246 tagctgatgggacgc 232
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1084 bits (547), Expect = 0.0
Identities = 553/555 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcaatgcccctgtgg 560
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatgggacgc 635
|||||||||||||||
Sbjct: 241 tagctgatgggacgc 227
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1084 bits (547), Expect = 0.0
Identities = 553/555 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcaatgcccctgtgg 560
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatgggacgc 635
|||||||||||||||
Sbjct: 241 tagctgatgggacgc 227
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1084 bits (547), Expect = 0.0
Identities = 553/555 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcaatgcccctgtgg 560
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatgggacgc 635
|||||||||||||||
Sbjct: 241 tagctgatgggacgc 227
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1084 bits (547), Expect = 0.0
Identities = 553/555 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcaatgcccctgtgg 560
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatgggacgc 635
|||||||||||||||
Sbjct: 241 tagctgatgggacgc 227
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-74.f
(645 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And E... 1114 0.0
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1114 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1114 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1114 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1114 0.0
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 1522
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 620 tagctgatgggacgcgggcccatccg 645
||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccg 221
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccg 645
||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccg 216
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccg 645
||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccg 216
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccg 645
||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccg 216
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccg 645
||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccg 216
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-75.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 500
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 500
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 500
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 500
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgctcggaggaagaagcccttcggggtgtaaactcc 500
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgtaggcggcctggggc 648
||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggc 575
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-76.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And E... 1120 0.0
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1120 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1120 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1120 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1120 0.0
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 1522
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaa 218
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaa 213
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaa 213
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaa 213
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaa 213
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-77.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1120 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1120 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1120 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1120 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1120 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcgctgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcg 648
|||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcg 576
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-78.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And E... 1118 0.0
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1118 0.0
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 1522
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccgga 219
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1118 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccgga 647
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-79.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 821 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 821 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 821 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 821 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 821 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 821 bits (414), Expect = 0.0
Identities = 438/447 (97%), Gaps = 1/447 (0%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcgagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 440 aaaaacaagaattttcgtaactgggaaattttaaaatattaaaaactttcaacaacggat 499
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaact-ggaaattttaaaatattaaaaactttcaacaacggat 428
Query: 500 ctcttggttctcgcatcgatgaagaac 526
|||||||||||||||||||||||||||
Sbjct: 429 ctcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 821 bits (414), Expect = 0.0
Identities = 438/447 (97%), Gaps = 1/447 (0%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcgagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 440 aaaaacaagaattttcgtaactgggaaattttaaaatattaaaaactttcaacaacggat 499
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaact-ggaaattttaaaatattaaaaactttcaacaacggat 427
Query: 500 ctcttggttctcgcatcgatgaagaac 526
|||||||||||||||||||||||||||
Sbjct: 428 ctcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 821 bits (414), Expect = 0.0
Identities = 438/447 (97%), Gaps = 1/447 (0%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcgagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 440 aaaaacaagaattttcgtaactgggaaattttaaaatattaaaaactttcaacaacggat 499
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaact-ggaaattttaaaatattaaaaactttcaacaacggat 426
Query: 500 ctcttggttctcgcatcgatgaagaac 526
|||||||||||||||||||||||||||
Sbjct: 427 ctcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 821 bits (414), Expect = 0.0
Identities = 438/447 (97%), Gaps = 1/447 (0%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcgagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 440 aaaaacaagaattttcgtaactgggaaattttaaaatattaaaaactttcaacaacggat 499
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaact-ggaaattttaaaatattaaaaactttcaacaacggat 424
Query: 500 ctcttggttctcgcatcgatgaagaac 526
|||||||||||||||||||||||||||
Sbjct: 425 ctcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 821 bits (414), Expect = 0.0
Identities = 438/447 (97%), Gaps = 1/447 (0%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcgagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 440 aaaaacaagaattttcgtaactgggaaattttaaaatattaaaaactttcaacaacggat 499
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaact-ggaaattttaaaatattaaaaactttcaacaacggat 427
Query: 500 ctcttggttctcgcatcgatgaagaac 526
|||||||||||||||||||||||||||
Sbjct: 428 ctcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-80.f
(647 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 842 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 842 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 842 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 842 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 842 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-81.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 829 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 829 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 829 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 829 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 829 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaactgtcctataacaaaagcacagaa 321
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 502 gcaggttcacctacggagaccttgtta 528
||||||||||||||||| |||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaactgtcctataacaaaagcacagaa 321
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 502 gcaggttcacctacggagaccttgtta 528
||||||||||||||||| |||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaactgtcctataacaaaagcacagaa 321
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 502 gcaggttcacctacggagaccttgtta 528
||||||||||||||||| |||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaactgtcctataacaaaagcacagaa 321
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 502 gcaggttcacctacggagaccttgtta 528
||||||||||||||||| |||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 829 bits (418), Expect = 0.0
Identities = 438/447 (97%)
Strand = Plus / Minus
Query: 82 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 142 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 202 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 262 aaaactccacagtgtgttgtattgaaacggttttaactgtcctataacaaaagcacagaa 321
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 322 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 382 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 442 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 502 gcaggttcacctacggagaccttgtta 528
||||||||||||||||| |||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-82.f
(640 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 842 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 842 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 842 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 842 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 842 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 81 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 141 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 201 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 261 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 321 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 381 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 441 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 501 tcttggttctcgcatcgatgaagaac 526
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-83.f
(626 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-84.f
(625 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 835 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 835 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 835 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 835 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 835 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 78 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 138 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 197
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 198 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 258 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 318 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 378 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 438 aagaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 497
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 498 tcttggttctcgcatcgatgaagaac 523
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 78 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 138 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 197
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 198 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 258 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 318 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 378 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 438 aagaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 497
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 498 tcttggttctcgcatcgatgaagaac 523
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 78 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 138 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 197
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 198 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 258 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 318 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 378 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 438 aagaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 497
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 498 tcttggttctcgcatcgatgaagaac 523
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 78 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 138 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 197
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 198 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 258 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 318 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 378 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 438 aagaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 497
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 498 tcttggttctcgcatcgatgaagaac 523
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 78 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 138 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 197
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 198 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 258 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 318 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 378 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 438 aagaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 497
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 498 tcttggttctcgcatcgatgaagaac 523
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-85.f
(635 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1092 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1092 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1092 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1092 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1092 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1092 bits (551), Expect = 0.0
Identities = 551/551 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcg 632
|||||||||||
Sbjct: 548 cgtaaagggcg 558
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1092 bits (551), Expect = 0.0
Identities = 551/551 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcg 632
|||||||||||
Sbjct: 548 cgtaaagggcg 558
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1092 bits (551), Expect = 0.0
Identities = 551/551 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcg 632
|||||||||||
Sbjct: 548 cgtaaagggcg 558
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1092 bits (551), Expect = 0.0
Identities = 551/551 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcg 632
|||||||||||
Sbjct: 548 cgtaaagggcg 558
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1092 bits (551), Expect = 0.0
Identities = 551/551 (100%)
Strand = Plus / Plus
Query: 82 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 142 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 202 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 262 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 322 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 382 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 442 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 502 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 562 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 622 cgtaaagggcg 632
|||||||||||
Sbjct: 548 cgtaaagggcg 558
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-86.f
(635 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1098 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1098 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1098 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1098 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1098 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1098 bits (554), Expect = 0.0
Identities = 554/554 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgt 634
||||||||||||||
Sbjct: 548 cgtaaagggcgtgt 561
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1098 bits (554), Expect = 0.0
Identities = 554/554 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgt 634
||||||||||||||
Sbjct: 548 cgtaaagggcgtgt 561
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1098 bits (554), Expect = 0.0
Identities = 554/554 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgt 634
||||||||||||||
Sbjct: 548 cgtaaagggcgtgt 561
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1098 bits (554), Expect = 0.0
Identities = 554/554 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgt 634
||||||||||||||
Sbjct: 548 cgtaaagggcgtgt 561
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1098 bits (554), Expect = 0.0
Identities = 554/554 (100%)
Strand = Plus / Plus
Query: 81 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 141 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 201 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 261 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 321 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 381 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 441 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 501 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 561 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 621 cgtaaagggcgtgt 634
||||||||||||||
Sbjct: 548 cgtaaagggcgtgt 561
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-87.f
(648 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And E... 1120 0.0
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1120 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1120 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1120 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1120 0.0
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 1522
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaa 218
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaa 213
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaa 213
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaa 213
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaa 213
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-88.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1130 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1130 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1130 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1130 0.0
pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal... 1130 0.0
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
>pdb|3UZ7|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex
Length = 1506
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 80 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tttgatcctggctcagggtgaacgctggcggcgtgcctaagacatgcaagtcgtgcgggc 67
Query: 140 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcggggttttactccgtggtcagcggcggacgggtgagtaacgcgtgggtgacctaccc 127
Query: 200 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaagagggggacaacccggggaaactcgggctaatcccccatgtggacccgccccttgg 187
Query: 260 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtgtgtccaaagggctttgcccgcttccggatgggcccgcgtcccatcagctagttggt 247
Query: 320 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggggtaatggcccaccaaggcgacgacgggtagccggtctgagaggatggccggccacag 307
Query: 380 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggcactgagacacgggccccactcctacgggaggcagcagttaggaatcttccgcaatg 367
Query: 440 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggcgcaagcctgacggagcgacgccgcttggaggaagaagcccttcggggtgtaaactcc 427
Query: 500 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaacccgggacgaaacccccgacgaggggactgacggtaccggggtaatagcgccggcc 487
Query: 560 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aactccgtgccagcagccgcggtaatacggagggcgcgagcgttacccggattcactggg 547
Query: 620 cgtaaagggcgtgtaggcggcctggggcgt 649
||||||||||||||||||||||||||||||
Sbjct: 548 cgtaaagggcgtgtaggcggcctggggcgt 577
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-89.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And E... 1122 0.0
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1122 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1122 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1122 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1122 0.0
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 1522
Score = 1122 bits (566), Expect = 0.0
Identities = 569/570 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 619 tagctgatgggacgcgggcccatccggaag 648
||||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccggaag 217
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1122 bits (566), Expect = 0.0
Identities = 569/570 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 619 tagctgatgggacgcgggcccatccggaag 648
||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaag 212
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1122 bits (566), Expect = 0.0
Identities = 569/570 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 619 tagctgatgggacgcgggcccatccggaag 648
||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaag 212
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1122 bits (566), Expect = 0.0
Identities = 569/570 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 619 tagctgatgggacgcgggcccatccggaag 648
||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaag 212
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1122 bits (566), Expect = 0.0
Identities = 569/570 (99%)
Strand = Plus / Minus
Query: 79 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 139 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 199 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 259 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 319 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 379 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 439 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 499 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 559 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 619 tagctgatgggacgcgggcccatccggaag 648
||||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccggaag 212
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-90.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And E... 1110 0.0
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1110 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1110 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1110 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1110 0.0
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 1522
Score = 1110 bits (560), Expect = 0.0
Identities = 566/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 620
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 621 tagctgatgggacgcgggcccatccgga 648
||||||||||||||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccgga 219
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1110 bits (560), Expect = 0.0
Identities = 566/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 620
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatgggacgcgggcccatccgga 648
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1110 bits (560), Expect = 0.0
Identities = 566/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 620
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatgggacgcgggcccatccgga 648
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1110 bits (560), Expect = 0.0
Identities = 566/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 620
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatgggacgcgggcccatccgga 648
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1110 bits (560), Expect = 0.0
Identities = 566/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccgttaccccaccaac 620
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatgggacgcgggcccatccgga 648
||||||||||||||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-91.f
(648 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 80 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 140 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 200 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 260 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 320 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 380 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 440 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 500 gcaggttcacctacggaaaccttgtta 526
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-92.f
(647 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 835 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 835 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 835 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 835 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 835 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttccttgggcattcga 378
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 499 tcttggttctcgcatcgatgaagaac 524
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttccttgggcattcga 378
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 499 tcttggttctcgcatcgatgaagaac 524
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttccttgggcattcga 378
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 499 tcttggttctcgcatcgatgaagaac 524
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttccttgggcattcga 378
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 499 tcttggttctcgcatcgatgaagaac 524
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 835 bits (421), Expect = 0.0
Identities = 438/446 (98%)
Strand = Plus / Plus
Query: 79 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 139 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 198
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 199 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 259 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 319 tttcaatacaacacactgtggagttttcatatctttgcaactttttccttgggcattcga 378
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 379 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 439 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 499 tcttggttctcgcatcgatgaagaac 524
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-93.f
(634 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 841 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 841 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 841 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 841 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 841 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 841 bits (424), Expect = 0.0
Identities = 438/445 (98%)
Strand = Plus / Plus
Query: 79 aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 70
Query: 139 aatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagaga 198
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 aatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagaga 130
Query: 199 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 190
Query: 259 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 250
Query: 319 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 310
Query: 379 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 370
Query: 439 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 430
Query: 499 cttggttctcgcatcgatgaagaac 523
|||||||||||||||||||||||||
Sbjct: 431 cttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 841 bits (424), Expect = 0.0
Identities = 438/445 (98%)
Strand = Plus / Plus
Query: 79 aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 69
Query: 139 aatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagaga 198
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagaga 129
Query: 199 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 189
Query: 259 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 249
Query: 319 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 309
Query: 379 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 369
Query: 439 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 429
Query: 499 cttggttctcgcatcgatgaagaac 523
|||||||||||||||||||||||||
Sbjct: 430 cttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 841 bits (424), Expect = 0.0
Identities = 438/445 (98%)
Strand = Plus / Plus
Query: 79 aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 68
Query: 139 aatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagaga 198
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagaga 128
Query: 199 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 188
Query: 259 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 248
Query: 319 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 308
Query: 379 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 368
Query: 439 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 428
Query: 499 cttggttctcgcatcgatgaagaac 523
|||||||||||||||||||||||||
Sbjct: 429 cttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 841 bits (424), Expect = 0.0
Identities = 438/445 (98%)
Strand = Plus / Plus
Query: 79 aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 66
Query: 139 aatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagaga 198
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 aatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagaga 126
Query: 199 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 186
Query: 259 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 246
Query: 319 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 306
Query: 379 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 366
Query: 439 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 426
Query: 499 cttggttctcgcatcgatgaagaac 523
|||||||||||||||||||||||||
Sbjct: 427 cttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 841 bits (424), Expect = 0.0
Identities = 438/445 (98%)
Strand = Plus / Plus
Query: 79 aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 aacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttgaa 69
Query: 139 aatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagaga 198
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagaga 129
Query: 199 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttctt 189
Query: 259 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccgt 249
Query: 319 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcgag 309
Query: 379 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 caatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtca 369
Query: 439 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatct 429
Query: 499 cttggttctcgcatcgatgaagaac 523
|||||||||||||||||||||||||
Sbjct: 430 cttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-94.f
(640 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 502 tcttggttctcgcatcgatgaagaacg 528
|||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaacg 456
Score = 165 bits (83), Expect = 5e-37
Identities = 97/104 (93%)
Strand = Plus / Plus
Query: 529 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 68
Query: 589 aaaatggannnnnnngttttggcaagagcatgagagcttttact 632
|||||||| |||||||||||||||||||||||||||||
Sbjct: 69 aaaatggatttttttgttttggcaagagcatgagagcttttact 112
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 502 tcttggttctcgcatcgatgaagaacg 528
|||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaacg 455
Score = 165 bits (83), Expect = 5e-37
Identities = 97/104 (93%)
Strand = Plus / Plus
Query: 529 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 67
Query: 589 aaaatggannnnnnngttttggcaagagcatgagagcttttact 632
|||||||| |||||||||||||||||||||||||||||
Sbjct: 68 aaaatggatttttttgttttggcaagagcatgagagcttttact 111
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 502 tcttggttctcgcatcgatgaagaacg 528
|||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaacg 454
Score = 165 bits (83), Expect = 5e-37
Identities = 97/104 (93%)
Strand = Plus / Plus
Query: 529 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 66
Query: 589 aaaatggannnnnnngttttggcaagagcatgagagcttttact 632
|||||||| |||||||||||||||||||||||||||||
Sbjct: 67 aaaatggatttttttgttttggcaagagcatgagagcttttact 110
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 502 tcttggttctcgcatcgatgaagaacg 528
|||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaacg 452
Score = 165 bits (83), Expect = 5e-37
Identities = 97/104 (93%)
Strand = Plus / Plus
Query: 529 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 64
Query: 589 aaaatggannnnnnngttttggcaagagcatgagagcttttact 632
|||||||| |||||||||||||||||||||||||||||
Sbjct: 65 aaaatggatttttttgttttggcaagagcatgagagcttttact 108
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Plus
Query: 82 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 142 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 202 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 262 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 322 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 382 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 442 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 502 tcttggttctcgcatcgatgaagaacg 528
|||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaacg 455
Score = 165 bits (83), Expect = 5e-37
Identities = 97/104 (93%)
Strand = Plus / Plus
Query: 529 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gtaacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttg 67
Query: 589 aaaatggannnnnnngttttggcaagagcatgagagcttttact 632
|||||||| |||||||||||||||||||||||||||||
Sbjct: 68 aaaatggatttttttgttttggcaagagcatgagagcttttact 111
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-95.f
(633 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 842 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 842 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 842 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 842 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 842 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 69
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 129
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 189
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 249
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 309
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 369
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 429
Query: 500 tcttggttctcgcatcgatgaagaac 525
||||||||||||||||||||||||||
Sbjct: 430 tcttggttctcgcatcgatgaagaac 455
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 500 tcttggttctcgcatcgatgaagaac 525
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 67
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 127
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 187
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 247
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 307
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 367
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 427
Query: 500 tcttggttctcgcatcgatgaagaac 525
||||||||||||||||||||||||||
Sbjct: 428 tcttggttctcgcatcgatgaagaac 453
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 65
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 125
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 185
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 245
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 305
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 365
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 425
Query: 500 tcttggttctcgcatcgatgaagaac 525
||||||||||||||||||||||||||
Sbjct: 426 tcttggttctcgcatcgatgaagaac 451
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 842 bits (425), Expect = 0.0
Identities = 439/446 (98%)
Strand = Plus / Plus
Query: 80 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 taacaaggtttccgtaggtgaacctgcggaaggatcattaaagaaatttaataattttga 68
Query: 140 aaatggannnnnnngttttggcaagagcatgagagcttttactgggcaagaagacaagag 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatggatttttttgttttggcaagagcatgagagcttttactgggcaagaagacaagag 128
Query: 200 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atggagagtccagccgggcctgcgcttaagtgcgcggtcttgctaggcttgtaagtttct 188
Query: 260 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcttgctattccaaacggtgagagatttctgtgcttttgttataggacaattaaaaccg 248
Query: 320 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcaatacaacacactgtggagttttcatatctttgcaactttttctttgggcattcga 308
Query: 380 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaatcggggcccagaggtaacaaacacaaacaattttatctattcattaaatttttgtc 368
Query: 440 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaacaagaattttcgtaactggaaattttaaaatattaaaaactttcaacaacggatc 428
Query: 500 tcttggttctcgcatcgatgaagaac 525
||||||||||||||||||||||||||
Sbjct: 429 tcttggttctcgcatcgatgaagaac 454
BLAST Search Results
BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-96.f
(628 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribo... 844 0.0
gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribo... 844 0.0
gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribo... 844 0.0
gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribo... 844 0.0
gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribo... 844 0.0
>gb|GU942435.1| Uncultured eukaryote clone N709T_73 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 860
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 397
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 337
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 277
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 217
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 157
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 97
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 37
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 36 gcaggttcacctacggaaaccttgtta 10
>gb|GU942431.1| Uncultured eukaryote clone N709T_66 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 847
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
>gb|GU942402.1| Uncultured eukaryote clone N707T_94 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1269
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 395
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 335
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 275
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 215
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 155
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 95
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 35
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 34 gcaggttcacctacggaaaccttgtta 8
>gb|GU942395.1| Uncultured eukaryote clone N707T_85 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1355
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 393
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 333
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 273
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 213
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 153
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 93
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 33
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 32 gcaggttcacctacggaaaccttgtta 6
>gb|GU942361.1| Uncultured eukaryote clone N707T_41 18S ribosomal RNA gene, partial
sequence; internal transcribed spacer 1, complete
sequence; and 5.8S ribosomal RNA gene, partial sequence
Length = 1134
Score = 844 bits (426), Expect = 0.0
Identities = 440/447 (98%)
Strand = Plus / Minus
Query: 79 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgttcttcatcgatgcgagaaccaagagatccgttgttgaaagtttttaatattttaaaa 396
Query: 139 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttccagttacgaaaattcttgtttttgacaaaaatttaatgaatagataaaattgtttg 336
Query: 199 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttgttacctctgggccccgattgctcgaatgcccaaagaaaaagttgcaaagatatg 276
Query: 259 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaactccacagtgtgttgtattgaaacggttttaattgtcctataacaaaagcacagaa 216
Query: 319 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atctctcaccgtttggaatagcaagaaagaaacttacaagcctagcaagaccgcgcactt 156
Query: 379 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagcgcaggcccggctggactctccatctcttgtcttcttgcccagtaaaagctctcatg 96
Query: 439 ctcttgccaaaacnnnnnnntccattttcaaaattattaaatttctttaatgatccttcc 498
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ctcttgccaaaacaaaaaaatccattttcaaaattattaaatttctttaatgatccttcc 36
Query: 499 gcaggttcacctacggaaaccttgtta 525
|||||||||||||||||||||||||||
Sbjct: 35 gcaggttcacctacggaaaccttgtta 9
Database: /PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
Posted date: Apr 5, 2012 2:42 AM
Number of letters in database: 40,680,653,861
Number of sequences in database: 15,920,729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 15920729
Number of Hits to DB: 6,840,616,829
Number of extensions: 1643078543
Number of successful extensions: 632079054
Number of sequences better than 10.0: 7695396
Number of HSP's gapped: 593292123
Number of HSP's successfully gapped: 391496259
Length of database: 40,680,653,861
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 13 (26.3 bits)
S2: 21 (42.1 bits)