BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-87.f
(648 letters)
Database: /PUBDB/blastdb/ddbj/16S/2012_04_06_01_00_0/16S
298,797 sequences; 305,506,631 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M26923_1|Thermus thermophilus|16S ribosomal RNA 1120 0.0
EU652052_1|Thermus thermophilus|16S ribosomal RNA 1120 0.0
EU214609_1|Thermus thermophilus|16S ribosomal RNA 1120 0.0
EF095713_1|Thermus thermophilus|16S ribosomal RNA 1120 0.0
DQ087525_1|Thermus sp. E26|16S ribosomal RNA 1120 0.0
>M26923_1|Thermus thermophilus|16S ribosomal RNA
Length = 1775
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 816
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 756
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 696
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 636
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 576
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 516
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 456
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 396
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 336
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 335 tagctgatgggacgcgggcccatccggaa 307
>EU652052_1|Thermus thermophilus|16S ribosomal RNA
Length = 1480
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaa 210
>EU214609_1|Thermus thermophilus|16S ribosomal RNA
Length = 1515
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 726
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 666
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 606
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 546
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 486
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 426
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 366
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 306
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 246
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 245 tagctgatgggacgcgggcccatccggaa 217
>EF095713_1|Thermus thermophilus|16S ribosomal RNA
Length = 1381
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 607
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 547
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 487
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 427
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 367
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 307
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 247
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 187
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 127
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 126 tagctgatgggacgcgggcccatccggaa 98
>DQ087525_1|Thermus sp. E26|16S ribosomal RNA
Length = 1480
Score = 1120 bits (565), Expect = 0.0
Identities = 568/569 (99%)
Strand = Plus / Minus
Query: 80 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 719
Query: 140 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 659
Query: 200 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 599
Query: 260 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 539
Query: 320 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 479
Query: 380 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 419
Query: 440 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 359
Query: 500 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 299
Query: 560 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 239
Query: 620 tagctgatgggacgcgggcccatccggaa 648
|||||||||||||||||||||||||||||
Sbjct: 238 tagctgatgggacgcgggcccatccggaa 210
BLAST Search Results