BLASTN 2.2.20 [Feb-08-2009]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TST-17.f
(650 letters)
Database:
/PUBDB/blastdb/NCBI/blast/db/FASTA/2012_04_04_23_00_0/nt
15,920,729 sequences; 40,680,653,861 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And E... 1102 0.0
pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal... 1102 0.0
pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal... 1102 0.0
pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal... 1102 0.0
pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal... 1102 0.0
>pdb|4ABR|A Chain A, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 1522
Score = 1102 bits (556), Expect = 0.0
Identities = 565/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 727
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 667
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 607
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 547
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 487
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 427
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 367
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 307
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 306 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 247
Query: 621 tagctgatggggcgcgggcccatccgga 648
||||||||||| ||||||||||||||||
Sbjct: 246 tagctgatgggacgcgggcccatccgga 219
>pdb|3UZM|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1102 bits (556), Expect = 0.0
Identities = 565/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatggggcgcgggcccatccgga 648
||||||||||| ||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZL|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
Length = 1506
Score = 1102 bits (556), Expect = 0.0
Identities = 565/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatggggcgcgggcccatccgga 648
||||||||||| ||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZI|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1102 bits (556), Expect = 0.0
Identities = 565/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatggggcgcgggcccatccgga 648
||||||||||| ||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
>pdb|3UZG|A Chain A, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
Length = 1506
Score = 1102 bits (556), Expect = 0.0
Identities = 565/568 (99%)
Strand = Plus / Minus
Query: 81 taccagggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 140
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tacccgggtatctaatccggtttgctccccacgctttcgcgcctcagcgtcacgggtgga 722
Query: 141 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccaggtggctgccttcgccatcggcgttcctcccggtatctgcgcatttcaccgctactc 662
Query: 201 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgggaattccaccaccctctcccaccgtctagcctgagcgtatcccacgctcccccacgg 602
Query: 261 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgagccgtggtctttcacatgggacgccccaggccgcctacacgccctttacgcccagt 542
Query: 321 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatccgggtaacgctcgcgccctccgtattaccgcggctgctggcacggagttggccgg 482
Query: 381 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgctattaccccggtaccgtcagtcccctcgtcgggggtttcgtcccgggttcaggagtt 422
Query: 441 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaccccgaagggcttcttcctccaagcggcgtcgctccgtcaggcttgcgcccattgc 362
Query: 501 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggaagattcctaactgctgcctcccgtaggagtggggcccgtgtctcagtgcccctgtgg 302
Query: 561 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccgccaac 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 301 ccggccatcctctcagaccggctacccgtcgtcgccttggtgggccattaccccaccaac 242
Query: 621 tagctgatggggcgcgggcccatccgga 648
||||||||||| ||||||||||||||||
Sbjct: 241 tagctgatgggacgcgggcccatccgga 214
BLAST Search Results