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SMARTer® ThruPLEX® Plasma-seq Kit

参考文献

Cell-free DNA

  • Copy number variations in urine cell free DNA as biomarkers in advanced prostate cancer.
    Xia Y, Huang CC, Dittmar, R, Du M, Wang Y, Liu, H, Shenoy N, Wang L and Kohli M. Oncotarget, 2016 Apr 26. doi: 10.18632/oncotarget.9027.
  • Evaluation of exome sequencing to estimate tumor burden in plasma.
    Klevebring D, Neiman M, Sundling S, Eriksson L, Darai Ramqvist E, Celebioglu F, Czene K, Hall P, Eqevad L, Gronberg H, Lindberg J. PLos One, 2014 Aug 18;9(8): e104417.DOI:10.1371/journal.pone.0104417. eCollection 2014.
  • Non-invasive analysis of acquired resistance to cancer therapy by sequencing of plasma DNA
    Murtaza et al. Nature, 2013 May 2;497(7447):108-12. DOI: 10.1038/nature12065.
    Epub 2013 Apr 7.
  • Non-invasive whole-genome sequencing of a human fetus
    Kitzman et al. Sci. Transl. Med., 2012 Jun 6;4(137):137ra76. DOI: 10.1126/scitranslmed.3004323.

ChIP-Seq

  • Genomic Characterization of Metformin Hepatic Response
    Marcelo R. Luizon, Walter L. Eckalbar, Yao Wang, Stacy L. Jones, Robin, P. Smith, Megan Laurance5, Lawrence Lin1, Paul J. Gallins6, Amy S. Etheridge, Fred Wright, Yihui Zhou, Cliona Molony, Federico Innocenti, Sook Wah Yee, Kathleen, M. Giacomini, Nadav Ahituv. PLOS Genetics, Published: November 30, 2016. http://dx.doi.org/10.1371/journal.pgen.1006449.
  • TRIM24 is an oncogenic transcriptional activator in prostate cancer.
    Groner AC, Cato L, de Tribolet-Hardy J, Bernasocchi T, Janouskova H, Melchers D, Houtman R, Cato AC, Tschopp P, Gu L, Corsinotti A, Zhong Q, Fankhauser C, Fritz C, Poyet C, Wagner U, Guo T, Aebersold R, Garraway LA, Wild PJ, Theurillat JP, Brown M. Cancer Cell, 2016 May 24. pii: S1535-6108(16)30170-2. doi: 10.1016/j.ccell.2016.04.012.
  • Loss of Pcgf5 affects global H2A monoubiquitination but not the function of hematopoietic stem and progenitor cells.
    Sha Si, Yaeko Nakajima-Takagi, Kazumasa Aoyama, Motohiko Oshima, Atsunori Saraya, Hiroki Sugishita, Manabu Nakayama, Tomoyuki Ishikura, Haruhiko Koseki, Atsushi Iwama. PLoS One, 2016 May 2;11(5):e0154561. DOI: 10.1371/journal.pone.0154561. eCollection 2016
  • Sp7/Osterix is restricted to bone-forming vertebrates where it acts as a Dlx co-factor in osteoblast specification.
    Hironori Hojo, Shinsuke Ohba, Xinjun He, Lick Pui Lai, Andrew P. McMahon. Dev Cell, 2016 April 26. pii: S1534-5807(16)30197-6. Doi:10.1016/j.devcel.2016.04.002
  • Differential regulation of mouse and human nephron progenitors by the six family of transcriptional regulators.
    O’Brien L, Guo Q, Lee YJ, Tran T, Benazet JD, Whitney PH, Valouev A, McMahon AP. Development, 2016 Feb 15;143(4):595-608. DOI: 10.1242/dev.127175
  • BET inhibitor resistance emerges from leukaemia stem cells.
    Fong, C. Y., Gilan, O., Lam, E. Y., Rubin, A. F., Ftouni, S., Tyler, D., Stanley, et al. Nature, 2015;525(7570):538-42. DOI: 10.1038/nature14888.
  • Batf3 maintains autoactivation of Irf8 for commitment of a CD8α(+) conventional DC clonogenic progenitor.
    Grajales-Reyes GE, Iwata A, Albring J, Wu X, Tussiwand R, Kc W, Kretzer, N. M., Briseño, C. G., Durai, V., Bagadia, P., Haldar, M., Schönheit, J., Rosenbauer, F., Murphy, T.L. and Murphy, K. M. Nat. Immunol., 2015;16(7):708-17. DOI: 10.1038/ni.3197.
  • A microfluidic device for epigenomic profiling using 100 cells.
    Cao Z, Chen C, He B, Tan K, Lu C. Nat. Methods., 2015. DOI: 10.1038/nmeth.3488.
  • SCML2 establishes the male germline epigenome through regulation of histone H2A ubiquitination.
    Hasegawa, K., Sin, H.S., Maezawa, S., Broering, T.J., Katashov, A. V., Alavattam, K.G., Ichijima, Y., Zhang, F., Bacon, W. C., Greis, K. D., Andreassen, P. R., Barski, A. and Namekawa, S. H., Dev. Cell, 2015;32(5):574-88. DOI: 10.1016/j.device.2015.01.014
  • Epigenomic profiling of young and aged HSCs revels concerted changes during aging that reinforce self-renewal.
    Sun D, Luo M, Jeong M, Rodriguez B, Xia Z, Hannah R, Wang H, Le T, Faull KF, Chen R, Gu H, Bock C, Meissner A, Göttgens B, Darlington GJ, Li W, Goodell MA. Cell Stem Cell, 2014 May 1;14(5):673-88. DOI: 10.1016/j.devcel.2015.01.014.
  • Large conserved domains of low DNA methylation maintained by Dnmt3a
    Jeong et al. Nat. Genet., 2014 Jan;46(1):17-23. DOI: 10.1038/ng.2836.
  • Broadly permissive intestinal chromatin underlies lateral inhibition and cell plasticity
    Kim et al. Nature, (2014 January 12). DOI:10.1038/nature12903.
  • Bivalent chromatin marks developmental regulatory genes in the mouse embryonic germline in vivo Sachs et al. Cell Rep., 2013 May 30. pii: S2211-1247(13)00214-3. DOI: 10.1016/j.celrep.2013.04.032.

Other

  • Characterization of the cytokinin-responsive transcriptome in rice
    Tracy Raines, Ivory C. Blakley, Yu-Chang Tsai, Jennifer M. Worthen, José Manuel Franco Zorrilla, Roberto Solano, G. Eric Schaller, Ann E. Loraine and Joseph J. Kieber. BMC Plant Biology, 2016 16:260. DOI: 10.1186/s12870-016-0932-z
  • Metagenome-assembled genomes uncover a global brackish microbiome.
    Hugerth LW, Larsson J, Alneberg J, Lindh MV, Legrand C, Pinhassi J, et al. 2015 bioRxiv (2015) DOI: http://dx.doi.org/10.1101/018465.
  • Whole genome prediction for preimplantation genetic diagnosis.
    Kumar, A., Ryan, A., Kitzman, J. O., Wemmer, N., Snyder, M. W., Sigurjonsson, S., Lee, C., Banjevic, M., Zarutskie, P. W., Lewis, A. P., Shendure, J. and Rabinowitz, M. Genome Med, 2015;7(1):35. DOI: 10.1186/s13073-015-0160-4.
  • Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint indentification.
    Housheng Hansen, He Clifford, A Meyer, Sheng’en Shawn Hu, Mei-Wei Chen, Chongzhi Zang, Yin Liu, Prakash K Rao, Teng Fe, Han Xu, Henry Long, X Shirley Liu & Myles Brown. Nat. Methods, 2014 Jan;11(1):73-8. DOI: 10.1038/nmeth.2762.

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